Costion, Craig M., Edwards, Will, Ford, Andrew J., Metcalfe, Daniel J., Cross, Hugh B., Harrington, Mark G., Richardson, James E., Hilbert, David W., Lowe, Andrew, and Crayn, Darren M. (2015) Using phylogenetic diversity to identify ancient rain forest refugia and diversification zones in a biodiversity hotspot. Diversity and Distributions, 21 (3). pp. 1-11.

Crayn, Darren M., Costion, Craig, and Harrington, Mark G. (2015) The Sahul–Sunda floristic exchange: dated molecular phylogenies document Cenozoic intercontinental dispersal dynamics. Journal of Biogeography, 42 (1). pp. 11-24.

Puente Lelièvre, Caroline, Hislop, Michael, Harrington, Mark, Brown, Elizabeth A., Kuzmina, Maria, and Crayn, Darren M. (2015) A five-marker molecular phylogeny of the Styphelieae (Epacridoideae, Ericaceae) supports a broad concept of Styphelia. Australian Systematic Botany, 28 (6). pp. 368-387.

Puente-Lelievre, Caroline, Harrington, Mark G., Brown, Elizabeth A., Kuzmina, Maria, and Crayn, Darren M. (2013) Cenozoic extinction and recolonization in the New Zealand flora: the case of the fleshy-fruited epacrids (Styphelieae, Styphelioideae, Ericaceae). Molecular Phylogenetics and Evolution, 66 (1). pp. 203-214.

Harrington, Mark, and Zich, Frank (2012) A new combination in Australian Costaceae. Telopea, 14. pp. 9-10.

Harrington, Mark G., Jackes, Betsy R., Barrett, Matthew D., Craven, Lyn A., and Barrett, Russell L. (2012) Phylogenetic revision of Backhousieae (Myrtaceae): Neogene divergence, a revised circumscription of Backhousia and two new species. Australian Systematic Botany, 25 (6). pp. 404-417.

Costion, Craig, Ford, Andrew, Cross, Hugh, Crayn, Darren, Harrington, Mark, and Lowe, Andrew (2011) Plant DNA barcodes can accurately estimate species richness in poorly known floras. PLoS ONE, 6 (11). e26841. pp. 1-9.

Harrington, Mark G., and Gadek, Paul A. (2010) Phylogenetics of Hopbushes and Pepperflowers (Dodonaea, Diplopeltis – Sapindaceae) based on nuclear ribosomal ITS and partial ETS sequences incorporating secondary structure models. Australian Systematic Botany, 23 (6). pp. 431-442.

Biffin , Ed, Lucas, Eve J., Craven, Lyn A., da Costa, Itayguara Ribeiro, Harrington, Mark G., and Crisp, Michael D. (2010) Evolution of exceptional species richness among lineages of fleshy-fruited Myrtaceae. Annals of Botany, 106 (1). pp. 79-93.

Jones, Lynne M., Gadek, Paul A., and Harrington, Mark G. (2010) Population genetic structuring in a rare tropical plant: Idiospermum australiense (Diels) S.T. Blake. Plant Systematics and Evolution, 286 (3-4). pp. 133-139.

Buerki, Sven, Forest, Felix, Acevedo-Rodriguez, Pedro, Callmander, Martin W., Nylander, Johan A.A., Harrington, Mark, Sanmartin, Isabel, Kupfer, Philippe, and Alvarez, Nadir (2009) Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae). Molecular Phylogenetics and Evolution, 51 (2). pp. 238-258.

Harrington, Mark G., Biffen, Ed, and Gadek, Paul A. (2009) Comparative study of the evolution of nuclear ribosomal spacers incorporating secondary structure analyzes within Dodonaeoideae, Hippocastanoideae and Xanthoceroideae (Sapindaceae). Molecular Phylogenetics and Evolution, 50 (2). pp. 364-375.

Harrington, Mark G., and Gadek, Paul A. (2009) A species well travelled – the Dodonaea viscosa (Sapindaceae) complex based on phylogenetic analyses of nuclear ribosomal ITS and ETSf sequences. Journal of Biogeography, 36 (12). pp. 2313-2323.

Harrington, Mark (2008) Phylogeny and evolutionary history of Sapindaceae and Dodonaea. PhD thesis, James Cook University.

Biffin, E., Harrington, M.G., Crisp, M.D., Craven, L.A., and Gadek, P.A. (2007) Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae. Molecular Phylogenetics and Evolution, 43 (1). pp. 124-139.

Harrington, Mark G., Gadek, Paul A., and Edwards, Will (2005) The potential for predation induced somatic embryogenesis in storage cotyledons. Oikos, 111 (2). pp. 215-220.

Harrington, Mark G., Edwards, Karen J., Johnson, Sheila A., Chase, Mark W., and Gadek, Paul A. (2005) Phylogenetic inference in Sapindaceae sensu lato using plastid matK and rbcL DNA sequences. Systematic Botany, 30 (2). pp. 366-382.

Harrington, M. G., and Gadek, P. A. (2004) Molecular systematics of the Acmena alliance (Myrtaceae): phylogenetic analyses and evolutionary implications with reference to Australian taxa. Australian Systematic Botany, 17. pp. 63-72.