Mouillot, David, Velez, Laure, Maire, Eva, Masson, Alizée, Hicks, Christina C., Moloney, James, and Troussellier, Marc (2020) Global correlates of terrestrial and marine coverage by protected areas on islands. Nature Communications, 11. 4438.

Tang, Lei Stanley, Smith-Keune, Carolyn, Grice, Anthony C., Moloney, James M., and Hardesty, Britta Denise (2016) Genetic structure and diversity of the black-throated finch (Poephila cincta) across its current range. Australian Journal of Zoology, 64 (6). pp. 375-384.

Rechetelo, Juliana, Grice, Anthony, Reside, April Elizabeth, Hardesty, Britta Denise, and Moloney, James (2016) Movement patterns, home range size and habitat selection of an endangered resource tracking species, the black-throated finch (Poephila cincta cincta). PLoS ONE, 11 (11). e0167254. pp. 1-22.

Cheok, Jessica, Pressey, Robert L., Weeks, Rebecca, Andréfouët, Serge, and Moloney, James (2016) Sympathy for the devil: detailing the effects of planning-unit size, thematic resolution of reef classes, and socioeconomic costs on spatial priorities for marine conservation. PLoS One, 11 (11). E0164869. pp. 1-25.

Roberts, T.E., Moloney, J.M., Sweatman, H.P.A., and Bridge, T.C.L. (2015) Benthic community composition on submerged reefs in the central Great Barrier Reef. Coral Reefs, 34 (2). pp. 569-580.

Munroe, Samantha E.M., Simpfendorfer, Colin A., Moloney, James, and Heupel, Michelle R. (2015) Nearshore movement ecology of a medium-bodied shark, the creek whaler Carcharhinus fitzroyensis. Animal Biotelemetry, 3 (10). pp. 1-12.

De Freitas, Débora M., Sutton, Stephen G., Moloney, James M., Lédée, Elodie J.I., and Tobin, Renae C. (2013) Spatial substitution strategies of recreational fishers in response to zoning changes in the Great Barrier Reef Marine Park. Marine Policy, 40. pp. 145-153.

Kamrowski, Ruth L., Limpus, Col, Moloney, James, and Hamann, Mark (2012) Coastal light pollution and marine turtles: assessing the magnitude of the problem. Endangered Species Research, 19 (1). pp. 85-98.

Joseph, Hayley, Moloney, James, Maiava, Fuatai, McClintock, Shannon, Lammie, Patrick, and Melrose, Wayne (2011) First evidence of spatial clustering of lymphatic filariasis in an Aedes polynesiensis endemic area. Acta Tropica, 120 (Supplement 1). S39-S47.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62 (6). pp. 658-667.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425. pp. 233-246.

Santana Garcon, J., Grech, A., Moloney, J., and Hamann, M. (2010) Relative Exposure Index: an important factor in sea turtle nesting distribution. Aquatic Conservation: marine and freshwater ecosystems , 20 (2). pp. 140-149.

Dryden, Jennifer, Grech, Alana, Moloney, James, and Hamann, Mark (2008) Re-zoning of the Great Barrier Reef World Heritage Area: does it afford greater protection for marine turtles. Wildlife Research, 35 (5). pp. 477-485.

Moloney, James McLellan (2005) The effects of habitat fragmentation on bird communities in a naturally disturbed environment: the Wet Tropics lowlands. PhD thesis, James Cook University.

Maguire, Maxine, Skelly, Chris, Weinstein, Philip, and Moloney, James (1999) Simulation modelling of Aedes aegypti prevalence, an environmental hazard surveillance tool for the control of dengue epidemics. International Journal of Environmental Health Research, 9 (4). pp. 253-259.

Moloney, James M., Skelly, Chris, Weinstein, Philip, Maguire, Maxine, and Ritchie, Scott (1998) Domestic Aedes aegypti breeding site surveillance: limitations of remote sensing as a predictive surveillance tool. American Journal of Tropical Medicine and Hygiene, 59 (2). pp. 261-264.