Kuo, Chao-yang, Yuen, Yeong Shyan, Meng, Pei-Jie , Ho, Ping-Ho , Wang, Jih-Terng, Liu, Pi-Jen, Chang, Yang-Chi, Dai, Chang-Feng , Fan, Tung-Yung , Lin, Hsing-Juh, Baird, Andrew Hamilton, and Chen, Chaolun Allen (2012) Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLoS ONE, 7 (8). 44364. e44364- .

Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.

Hsieh, Hernyi J., Chen, Koa-Song, Lin , Yihan I., Huang , Yuanchao A., Baird, Andrew H., Tsai , Wan-Sen, Su, Wei-Cheng, and Chen, Chaolun A. (2011) Establishment of a No-take area (NTA) could not guarantee the preservation of coral communities in Chinwan Inner Bay, Penghu, Taiwan. Zoological Studies, 50 (4). pp. 443-453.

Huang, Y.-C.A., Hsieh, H.J., Huang, S.-C., Meng, P.-J., Chen, Y.-S., Keshavmurthy, S., Nozawa, Y., and Chen, C.A. (2011) Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters. Marine Ecology Progress Series, 423. pp. 83-93.

Wang, J.-T., Meng, P.-J., Sampayo, E., Tang, S.-L., and Chen, C.A. (2011) Photosystem II breakdown induced by reactive oxygen species in freshly-isolated Symbiodinium from Montipora (Scleractinia; Acroporidae). Marine Ecology Progress Series, 422. pp. 51-62.

Chen, Kao-Song, Hsieh, Hernyi Justin, Keshavmurthy, Shashank, Leung, Julia Ka Lai, Lien, I-Ting, Nakano, Yoshikatsu, Plathong, Sakanan, Huang, Hui, and Chen, Chaolun Allen (2011) Latitudinal gradient of morphological variations in zebra coral Oulastrea crispata (Scleractinia: Faviidae) in the West Pacific. Zoological Studies, 50 (1). pp. 43-52.

Fujii, T., Keshavmurthy, S., Zhou, W., Hirose, E., Chen, C.A., and Reimer, J.D. (2011) Coral-killing cyanobacteriosponge (Terpios hoshinota) on the Great Barrier Reef. Coral Reefs, 30 (2). p. 483.

Lin, Mei-Fang, Luzon, Katrina S., Licuanan, Wilfredo Y., Ablan-Lagman, Maria Carmen, and Chen, Chaolun A. (2011) Seventy-four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria; Anthozoa). Zoological Studies, 50 (4). pp. 513-524.

Chen, Chao, Tan, Tao, and Liu, Hongbo (2006) Study on the efficiency of pork supply chain in China. Journal of Nanjing Agricultural University, 6 (2). pp. 54-58.

Plathong, S., Chanmethakul, T., Suwonno, V., Buaphet, P., Baird, A.H., Chen, C.A., and Soontornpitakkool, S. (2006) Daytime gamete release from the reef-building coral, Pavona sp., in the Gulf of Thailand. Coral Reefs, 25 (1). p. 72.

Wolstenholme, J.K., Wallace, C.C., and Chen, C.A. (2003) Species boundaries within the Acropora humilis species group (Cnidaria; Scleractinia): a morphological and molecular interpretation of evolution. Coral Reefs, 22 (2). pp. 155-166.

Chen, Chaolum Allen, Wallace, Carden C., and Wolstenholme, Jackie (2002) Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Molecular Phylogenetics and Evolution, 23 (2). pp. 137-149.

Marquez, L.M., Mackenzie, J.B., Takabayashi, M., Smith, C.R., and Chen, C.A. (2000) Difficulties in obtaining microsatellites from acroporid corals. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 139-143. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Chen, C.L., Miller, David J., Wei, Nuwei Vivian, Dai, Chang-Feng, and Yang, Hsiao-Pei (2000) The ETS/IGS region in a lower animal, the seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): compactness, low variation and apparent conservation of a pre-rRNA processing signal with fungi. Zoological Studies, 39 (2). pp. 138-143.