Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.

Cruz-Motta, Juan J., Miloslavich, Patricia, Guerra-Castro, Edlin, Hernandez-Agreda, Alejandra, Herrera, Cesar, Barros, Francisco, Navarrete, Sergio A., Sepúlveda, Roger D., Glasby, Tim M., Bigatti, Gregorio, Cardenas-Calle, Maritza, Carneiro, Pedro B.M., Carranza, Alvar, Flores, Augusto A.V., Gil-Kodaka, Patricia, Gobin, Judith, Gutiérrez, Jorge L., Klein, Eduardo, Krull, Marcos, Lazarus, Juan F., Londoño-Cruz, Edgardo, Lotufo, Tito, Macaya, Erasmo C., Mora, Camilo, Mora, Elba, Palomo, Gabriela, Parragué, Mirtala, Pellizzari, Franciane, Retamales, Roberto, Rocha, Rosana M., and Romero, Leonardo (2020) Latitudinal patterns of species diversity on South American rocky shores: local processes lead to contrasting trends in regional and local species diversity. Journal of Biogeography, 47 (9). pp. 1966-1979.

Sheaves, Marcus, Bradley, Michael, Herrera, Cesar, Mattone, Carlo, Lennard, Caitlin, Sheaves, Janine, and Konovalov, Dmitry A. (2020) Optimizing video sampling for juvenile fish surveys: using deep learning and evaluation of assumptions to produce critical fisheries parameters. Fish and Fisheries, 21 (6). pp. 1259-1276.

Hernandez-Agreda, Alejandra, Leggat, William, Bongaerts, Pim, Herrera, Cesar, and Ainsworth, Tracy D. (2018) Rethinking the coral microbiome: simplicity exists within a diverse microbial biosphere. mBio, 9 (5).