Havula, E., Ghazanfar, S., Lamichane, N., Francis, D., Hasygar, K., Liu, Y., Alton, L.A., Johnstone, J., Needham, E.J., Pulpitel, T., Clark, T., Niranjan, H.N., Shang, V., Tong, V., Jiwnani, N., Audia, G., Alves, A.N., Sylow, L., Mirth, C., Neely, G.G., Yang, J., Hietakangas, V., Simpson, S.J., and Senior, A.M. (2022) Genetic variation of macronutrient tolerance in Drosophila melanogaster. Nature Communications, 13. 1637.

Scopulovic, Luke, Francis, Deanne, Pandzic, Elvis, and Francis, Richard (2022) Quantifying cilia beat frequency using high-speed video microscopy: Assessing frame rate requirements when imaging different ciliated tissues. Physiological Reports, 10 (11). e15349.

Francis, Deanne, Burguete, Alondra S., and Ghabrial, Amin S. (2022) Regulation of Archease by the mTOR-vATPase axis. Development, 149 (19). dev200908..

Yang, Guang, Francis, Deanne, Krycer, James R., Larance, Mark, Zhang, Ziyang, Novotny, Chris J., Diaz-Vegas, Alexis, Shokat, Kevan M., and James, David E. (2021) Dissecting the biology of mTORC1 beyond rapamycin. Science Signaling, 14 (701). eabe0161.

Francis, Deanne, Ghazanfar, Shila, Havula, Essi, Krycer, James R., Strbenac, Dario, Senior, Alistair, Minard, Annabel Y., Geddes, Thomas, Nelson, Marin E., Weiss, Fiona, Stöckli, Jacqueline, Yang, Jean Y.H., and James, David E. (2021) Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes. G3: Genes, Genomes, Genetics, 11 (10). jkab171.

Blazev, Ronnie, Ashwood, Christopher, Abrahams, Jodie L., Chung, Long H., Francis, Deanne, Yang, Pengyi, Watt, Kevin I., Qian, Hongwei, Quaife-Ryan, Gregory A., Hudson, James E., Gregorevic, Paul, Thaysen-Andersen, Morten, and Parker, Benjamin L. (2021) Integrated Glycoproteomics Identifies a Role of N-Glycosylation and Galectin-1 on Myogenesis and Muscle Development. Molecular and Cellular Proteomics, 20. 100030.

Krycer, James R., Quek, Lake-Ee, Francis, Deanne, Zadoorian, Armella, Weiss, Fiona C., Cooke, Kristen C., Nelson, Marin E., Diaz-Vegas, Alexis, Humphrey, Sean J., Scalzo, Richard, Hirayama, Akiyoshi, Ikeda, Satsuki, Shoji, Futaba, Suzuki, Kumi, Huynh, Kevin, Giles, Corey, Varney, Bianca, Nagarajan, Shilpa R., Hoy, Andrew J., Soga, Tomoyoshi, Meikle, Peter J., Cooney, Gregory J., Fazakerley, Daniel J., and James, David E. (2020) Insulin signaling requires glucose to promote lipid anabolism in adipocytes. Journal of Biological Chemistry, 295 (38). pp. 13250-13266.

Krycer, James R., Quek, Lake-Ee, Francis, Deanne, Fazakerley, Daniel J., Elkington, Sarah D., Diaz-Vegas, Alexis, Cooke, Kristen C., Weiss, Fiona C., Duan, Xiaowen, Kurdyukov, Sergey, Zhou, Ping-Xin, Tambar, Uttam K., Hirayama, Akiyoshi, Ikeda, Satsuki, Kamei, Yushi, Soga, Tomoyoshi, Cooney, Gregory J., and James, David E. (2020) Lactate production is a prioritized feature of adipocyte metabolism. Journal of Biological Chemistry, 295 (1). pp. 83-98.

Su, Zhiduan, Burchfield, James G., Yang, Pengyi, Humphrey, Sean J., Yang, Guang, Francis, Deanne, Yasmin, Sabina, Shin, Sung-Young, Norris, Dougall M., Kearney, Alison L., Astore, Miro A., Scavuzzo, Jonathan, Fisher-Wellman, Kelsey H., Wang, Qiao-Ping, Parker, Benjamin L., Neely, G. Gregory, Vafaee, Fatemeh, Chiu, Joyce, Yeo, Reichelle, Hogg, Philip J., Fazakerley, Daniel J., Nguyen, Lan K., Kuyucak, Serdar, and James, David E. (2019) Global redox proteome and phosphoproteome analysis reveals redox switch in Akt. Nature Communications, 10. 5486.

Nelson, Marin E., Parker, Benjamin L., Burchfield, James G., Hoffman, Nolal J., Needham, Elise J., Cooke, Kristen C., Naim, Timur, Sylow, Lykke, Ling, Naomi X.Y., Francis, Deanne, Norris, Dougall M., Chaudhuri, Rima, Oakhill, Jonathan S., Richter, Erik A., Lynch, Gordon S., Stöckli, Jacqueline, and James, David E. (2019) Phosphoproteomics reveals conserved exercise‐stimulated signaling and AMPK regulation of store‐operated calcium entry. The EMBO Journal, 38 (24).

Yang, Guang, Humphrey, Sean J., Murashige, Danielle S., Francis, Deanne, Wang, Qiao‐Ping, Cooke, Kristen C., Neely, G. Gregory, and James, David E. (2019) RagC phosphorylation autoregulates mTOR complex 1. The EMBO Journal, 38. e99548.

Burguete, Alondra Schweizer, Francis, Deanne, Rosa, Jeffrey, and Ghabrial, Amin (2019) The regulation of cell size and branch complexity in the terminal cells of the Drosophila tracheal system. Developmental Biology, 451. pp. 79-85.

Francis, Deanne, and Ghabrial, Amin S. (2015) Compensatory branching morphogenesis of stalk cells in the Drosophila trachea. Development, 142. pp. 2048-2057.

Cui, Cheng, Chatterjee, Bishwanath, Lozito, Thomas P., Zhang, Zhen, Francis, Richard J., Yagi, Hisato, Swanhart, Lisa M., Sanker, Subramaniam, Francis, Deanne, Yu, Qing, San Agustin, Jovenal T., Puligilla, Chandrakala, Chatterjee, Tania, Tansey, Terry, Liu, Xiaoqin, Kelley, Matthew W., Spiliotis, Elias T., Kwiatkowski, Adam V., Tuan, Rocky, Pazour, Gregory J., Hukriede, Neil A., and Lo, Cecilia W. (2013) Wdpcp, a PCP Protein Required for Ciliogenesis, Regulates Directional Cell Migration and Cell Polarity by Direct Modulation of the Actin Cytoskeleton. PLoS Biology, 11. e1001720.

Cui, Cheng, Chatterjee, Bishwanath, Francis, Deanne, Yu, Qing, SanAgustin, Jovenal T., Francis, Richard, Tansey, Terry, Henry, Charisse, Wang, Baolin, Lemley, Bethan, Pazour, Gregory J., and Lo, Cecilia W. (2011) Disruption of Mks1 localization to the mother centriole causes cilia defects and developmental malformations in Meckel-Gruber syndrome. Disease Models & Mechanisms, 4. pp. 43-56.