Also publishes as (John Day, J.C. Day, Jon C. Day)
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Hughes, Terry P., Day, John, and Brodie, Jon (2015) Securing the future of the Great Barrier Reef. Nature Climate Change, 5. pp. 508-511.
Pressey, Robert L., Mills, Morena, Weeks, Rebecca, and Day, Jon C. (2013) The plan of the day: managing the dynamic transition from regional conservation designs to local conservation actions. Biological Conservation, 166. pp. 155-169.
Kerrigan, Brigid, Breen, Daniel, De'ath, Glenn, Day, Jon, Fernandes, Leanne, Tobin, Renae, and Dobbs, Kirstin (2010) Classifying the Biodiversity of the Great Barrier Reef World Heritage Area. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.
Fernandes, Leanne, Day, John, Kerrigan, Brigid, Breen, Dan, De'ath, Glenn, Mapstone, Bruce, Coles, Rob, Done, Terry, Marsh, Helene, Poiner, Ian, Ward, Trevor, Williams, David, and Kenchington, Richard (2009) A process to design a network of marine no-take areas: lessons from the Great Barrier Reef. Ocean & Coastal Management, 52 (8). pp. 439-447.
McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.
Dobbs, Kirstin, Fernandes, Leanne, Slegers, Suzanne, Jago, Belinda, Thompson, Leanne, Hall, James, Day, Jon, Cameron, Darren, Tanzer, John, Macdonald, Fiona, Marsh, Helene, and Coles, Rob (2008) Incorporating dugong habitats into the marine protected area design for the Great Barrier Reef Marine Park, Queensland, Australia. Ocean & Coastal Management, 51 (4). pp. 368-375.
Fernandes, Leanne, Day, Jon, Lewis, Adam, Slegers, Suzanne, Kerrigan, Brigid, Breen, Dan, Cameron, Darren, Jago, Belinda, Hall, James, Lowe, David, Innes, James, Tanzer, John, Chadwick, Virginia, Thompson, Leanne, Gorman, Kerrie, Simmons, Mark, Barnett, Bryony, Sampson, Kirsti, De'ath, Glenn, Mapstone, Bruce, Marsh, Helene, Possingham, Hugh, Ball, Ian, Ward, Trevor, Dobbs, Kirstin, Aumend, James, Slater, Deb, and Stapleton, Kate (2005) Establishing representative no-take areas in the Great Barrier Reef: large-scale implementation of theory on marine protected areas. Conservation Biology, 19 (6). pp. 1733-1744.