Cumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta, Wernberg, Thomas, and Wilson, Shaun K. (2023) Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2). 66.

Bridge, Tom C.L., Baird, Andrew H., Pandolfi, John M., McWilliam, Michael J., and Zapalski, Mikolaj K. (2022) Functional consequences of Palaeozoic reef collapse. Scientific Reports, 12 (1). 1386.

Leonard, Nicole D., Lepore, Mauro L., Zhao, Jian-xin, Rodriguez-Ramirez, Alberto, Butler, Ian R., Clark, Tara R., Roff, George, McCook, Laurence, Nguyen, Ai D., Feng, Yuexing, and Pandolfi, John M. (2020) Re-evaluating mid-Holocene reef "turn-off" on the inshore Southern Great Barrier Reef. Quaternary Science Reviews, 244. 106518.

Caswell, Bryony A., Klein, Emily S., Alleway, Heidi, Ball, Johnathan E., Botero, Julián, Cardinale, Massimiliano, Eero, Margit, Engelhard, Georg H., Fortibuoni, Tomaso, Giraldo, Ana Judith, Hentati-Sundberg, Jonas, Jones, Peter, Kittinger, John N., Krause, Gesche, Lajus, Dmitry L., Lajus, Julia, Lau, Sally C.Y., Lescrauwaet, Ann Katrien, MacKenzie, Brian R., McKenzie, Matthew, Ojaveer, Henn, Pandolfi, John M., Raicevich, Saša, Russell, Bayden, Sundelöf, Andreas, Thorpe, Robert B., zu Ermgassen, Philine S.E., and Thurstan, Ruth H. (2020) Something old, something new: historical perspectives provide lessons for blue growth agendas. Fish and Fisheries, 21 (4). pp. 774-796.

Hua, Quan, Ulm, Sean, Yu, Kefu, Clark, Tara R., Nothdurft, Luke D., Leonard, Nicole D., Pandolfi, John M., Jacobsen, Geraldine E., and Zhao, Jian-xin (2020) Temporal variability in the Holocene marine radiocarbon reservoir effect for the tropical and South Pacific. Quaternary Science Reviews, 249. 106613.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

Madin, Joshua S., Hoogenboom, Mia O., Connolly, Sean R., Darling, Emily S., Falster, Daniel S., Huang, Danwei, Keith, Sally A., Mizerek, Toni, Pandolfi, John M., Putnam, Hollie M., and Baird, Andrew H. (2016) A trait-based approach to advance coral reef science. Trends in Ecology & Evolution, 31 (6). pp. 419-428.

Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. 19285. pp. 1-14.

Leonard, Nicole D., Zhao, J-x, Welsh, K.J., Feng, Y-x, Smithers, S.G., Pandolfi, J.M., and Clark, T.R. (2016) Holocene sea level instability in the southern Great Barrier Reef, Australia: high-precision U-Th dating of fossil microatolls. Coral Reefs, 35 (2). pp. 625-639.

Scheffers, Brett R., De Meester, Luc, Bridge, Tom C.L., Hoffmann, Ary A., Pandolfi, John M., Corlett, Richard T., Butchart, Stuart H.M., Pearce-Kelly, Paul, Kovacs, Kit M., Dudgeon, David, Pacifici, Michela, Rondinini, Carlo, Foden, Wendy B., Martin, Tara G., Mora, Camilo, Bickford, David, and Watson, James E.M. (2016) The broad footprint of climate change from genes to biomes to people. Science, 354 (6313). aaf7671-2. pp. 1-13.

Pratchett, Morgan S., Anderson, Kristen D., Hoogenboom, Mia O., Windman, Elizabeth, Baird, Andrew H., Pandolfi, John M., Edmunds, Peter J., and Lough, Janice M. (2015) Spatial, temporal and taxonomic variation in coral growth: implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology, 53. pp. 215-295.

Ban, Natalie C., Kittinger, John N., Pandolfi, John M., Pressey, Robert L., Thurstan, Ruth H., Lybolt, Matt J., and Hart, Simon (2014) Incorporating historical perspectives into systematic marine conservation planning. In: Kittinger, John N., McClenachan, Loren, Gedan, Keryn B., and Blight, Louise K, (eds.) Marine Historical Ecology in Conservation: applying the past to manage for the future. University of California Press, Oakland, CA, USA, pp. 207-233.

Munday, Philip L., Warner, Robert R., Monro, Keyne, Pandolfi, John M., and Marshall, Dustin J. (2013) Predicting evolutionary responses to climate change in the sea. Ecology Letters, 16 (12). pp. 1488-1500.

Bode, Michael, Connolly, Sean R., and Pandolfi, John M. (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5). pp. 577-588.

Mcleod, Elizabeth, Green, Alison, Game, Edward, Anthony, Kenneth, Cinner, Joshua, Heron, Scott F., Kleypas, Joanie, Lovelock, Catherine E., Pandolfi, John M., Pressey, Robert L., Salm, Rodney, Schill, Steve, and Woodroffe, Colin (2012) Integrating climate and ocean change vulnerability into conservation planning. Coastal Management, 40 (6). pp. 651-672.

Howard, William R., Nash, Merinda, Anthony, Kenneth, Schmutter, Katherine, Bostock, Helen, Bromhead, Donald, Byrne, Maria, Currie, Kim, Diaz-Pulido, Guillermo, Eggins, Stephen, Ellwood, Michael, Eyre, Bradley, Haese, Ralf, Hallegraeff, Gustaaf, Hill, Katy, Hurd, Catriona, Law, Cliff, Lenton, Andrew, Matear, Richard, McNeil, Ben, McCulloch, Malcolm, Muller, Marius N., Munday, Philip, Opdyke, Bradley, Pandolfi, John M., Richards, Russell, Roberts, Donna, Russell, Bayden D., Smith, Abigail M., Tilbrook, Bronte, Waite, Anya, and Williamson, Jane (2012) Ocean acidification. In: Poloczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, pp. 113-150.

Pandolfi, John, Connolly, Sean, Marshall, Dustin J., and Cohern, Anne L. (2011) The future of coral reefs - a response. Science, 334 (6062). pp. 1495-1496.

Beger, Maria, Babcock, Russ, Booth, David J., Bucher, Daniel, Condie, Scott A., Creese, Bob, Cvitanovic, Christopher, Dalton , Steve J., Harrison, Peter, Hoey, Andrew, Jordan, Alan, Loder, Jennifer, Malcolm, Hamish, Purcell, Steven W., Roelfsma, Chris, Sachs, Patrick , Smith, Stephen D.A., Sommer, Brigitte, Stuart-Smith, Rick, Thomson, Damian, Wallace, Carden C., Zann, Maria, and Pandolfi, John M. (2011) Research challenges to improve the management and conservation of subtropical reefs to tackle climate change threats. Ecological Management and Restoration, 12 (1). e7-e10.

Pandolfi, John M., Connolly, Sean R., Marshall, Dustin J., and Cohen, Anne L. (2011) Projecting coral reef futures under global warming and ocean acidification. Science, 333 (6041). pp. 418-422.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Brewer, Tom D., Cinner, Joshua E., Green, Alison, and Pandolfi, John M. (2009) Thresholds and multiple scale interaction of environment, resource use, and market proximity on reef fishery resources in the Solomon Islands. Biological Conservation, 142 (8). pp. 1797-1807.

Hoegh-Guldberg, Ove, Hughes, Terry, Marsh, Helene, Pandolfi, John, and Possingham, Hugh (2008) Urgent need for improved protection of the Coral Sea. In: Zethovan, Imogen, (ed.) An Australian Coral Sea Heritage Park. Pew Charitable Trusts, Philadelphia, USA, pp. 11-13.

Hughes, Terry P., Bellwood, David R., Folke, Carl S., McCook, Laurence J., and Pandolfi, John M. (2007) No-take areas, herbivory and coral reef resilience. Trends in Ecology & Evolution, 22 (1). pp. 1-3.

Jackson, Jeremy B.C., Ogden, John C., Pandolfi, John M., Baron, Nancy, Bradbury, Rodger H., Guzman, Hector M., Hughes, Terry, Kappel, Carrie V., Micheli, Fiorenza, Possingham, Hugh P., and Sala, Enric (2005) Reassessing U.S. coral reefs. Science, 308 (5729). pp. 1740-1742.

Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terrence P., Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, McClenachan, Loren, Newman, Marah J.H., Paredes, Gustavo, Warner, Robert R., and Jackson, Jeremy B.C. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1502-1503.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Card, M., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P.A., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Climate change, human impacts, and the resilience of coral reefs. Science, 301 (5635). pp. 929-933.

Strathmann, Richard R., Hughes, Terence P., Kuris, Armand M., Lindeman, Kenyon C., Morgan, Steven G., Pandolfi, John M., and Warner, Robert R. (2002) Evolution of local recruitment and its consequences for marine populations. Bulletin of Marine Science, 70 (Supple). pp. 377-396.

Jackson, Jeremy B. C., Kirby, Michael X., Berger, Wolfgang H., Bjorndal, Karen A., Botsford, Louis W., Bourque, Bruce J., Bradbury, Roger H., Cooke, Richard, Erlandson, Jon, Estes, James A., Hughes, Terence P., Kidwell, Susan, Lange, Carina B., Lenihan, Hunter S., Pandolfi, John M., Peterson, Charles H., Steneck, Robert S., Tegner, Mia J., and Warner, Robert R. (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science, 293 (5530). pp. 629-637.

Pandolfi, John M., and Jackson, Jeremy B.C. (2001) Community structure of pleistocene coral reefs of Curaçao, Netherlands Antilles. Ecological Monographs, 71 (1). pp. 49-67.

Wallace, Carden C., Pandolfi, John M., Young, Amanda, and Wolstenholme, Jacqueline (1991) Indo-Pacific coral biogeography: a case study from the Acropora selago group. Australian Systematic Botany, 4 (1). pp. 199-210.