Anderson-King, K.D., Wayman, C., Stephenson, S., Heron, S.F., Lough, J.M., McWilliam, M., Richardson, L.E., Scott, M.E., and Cantin, N.E. (2023) Branching coral growth and visual health during bleaching and recovery on the central Great Barrier Reef. Coral Reefs, 42. pp. 1113-1129.

Reed, Emma V., Thompson, Diane M., Cole, Julia E., Lough, Janice M., Cantin, Neal E., Cheung, Anson H., Tudhope, Alexander, Vetter, Lael, Jimenez, Gloria, and Edwards, R. Lawrence (2021) Impacts of coral growth on geochemistry: lessons from the Galápagos Islands. Paleoceanography and Paleoclimatology, 36 (4). e2020PA004051.

Johnson, Johanna E., Allain, Valerie, Basel, Britt, Bell, Johann D., Chin, Andrew, Dutra, Leo X. C., Hooper, Eryn, Loubser, David, Lough, Janice, Moore, Bradley R., and Nicol, Simon (2020) Impacts of climate change on marine resources in the Pacific Island region. In: Kumar, Lalit, (ed.) Climate Change and Impacts in the Pacific. Springer Climate . Springer, Cham, Switzerland, pp. 359-402.

Pratchett, Morgan, Bridge, Thomas, Brodie, Jon, Cameron, Darren, Day, Jonathan, Emslie, Mike, Grech, Alana, Hamann, Mark, Heron, Scott, Hoey, Andrew, Hoogenboom, Mia, Lough, Janice, Morrison, Tiffany, Osborne, Kate, Read, Mark, Schauble, Chloe, Smithers, Scott, Sweatman, Hugh, and Waterhouse, Jane (2019) Australia's Great Barrier Reef. In: Sheppard, Charles, (ed.) World Seas: an environmental evaluation. Elsevier, London, UK, pp. 333-362.

Hoegh-Guldberg, Ove, Skirving, William J., Lough, Janice M., Liu, Chunying, Mann, Michael E., Donner, Simon, Eakin, C. Mark, Cantin, Neal, Carilli, Jessica, Heron, Scott Fraser, Miller, Sonya, and Dove, Sophie (2019) Commentary: reconstructing four centuries of temperature-induced coral bleaching on the great barrier reef. Frontiers in Marine Science, 6. 86.

Saha, Narottam, Webb, Gregory E., Zhao, Jian-xin, Nguyen, Ai Duc, Lewis, Stephen, and Lough, Janice (2019) Coral-based high-resolution rare earth element proxy for terrestrial sediment discharge affecting coastal seawater quality, Great Barrier Reef. Geochimica et Cosmochimica Acta, 254. pp. 173-191.

Reed, Emma V., Cole, Julia E., Lough, Janice M., Thompson, Diane, and Cantin, Neal E. (2019) Linking climate variability and growth in coral skeletal records from the Great Barrier Reef. Coral Reefs, 38 (1). pp. 29-43.

Erler, Dirk V., Shepherd, Benjamin O., Linsley, Braddock K., Lough, Janice M., and Cantin, Neal E. (2018) Coral skeletons record increasing agriculture-related groundwater nitrogen inputs to a South Pacific reef over the past century. Geophysical Research Letters, 45 (16). pp. 8370-8378.

Lough, J.M., Anderson, K.D., and Hughes, T.P. (2018) Increasing thermal stress for tropical coral reefs: 1871-2017. Scientific Reports, 8. 6079. pp. 1-8.

Hughes, Terry P., Anderson, Kristen D., Connolly, Sean R., Heron, Scott F., Kerry, James T., Lough, Janice M., Baird, Andrew H., Baum, Julia, Berumen, Michael L., Bridge, Tom C., Claar, Danielle C., Eakin, C. Mark, Gilmour, James P., Graham, Nicholas A.J., Harrison, Hugo, Hobbs, Jean-Paul A., Hoey, Andrew S., Hoogenboom, Mia, Lowe, Ryan J., McCulloch, Malcolm T., Pandolfi, John M., Pratchett, Morgan, Schoepf, Verena, Torda, Gergely, and Wilson, Shaun K. (2018) Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science, 359 (6371). pp. 80-83.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Lewis, Stephen E., Lough, Janice M., Cantin, Neal E., Matson, Eric G., Kinsley, Les, Bainbridge, Zoe T., and Brodie, Jon E. (2018) A critical evaluation of coral Ba/Ca, Mn/Ca and Y/Ca ratios as indicators of terrestrial input: new data from the Great Barrier Reef, Australia. Geochimica et Cosmochimica Acta, 237. pp. 131-154.

Hughes, Terry P., Barnes, Michele L., Bellwood, David R., Cinner, Joshua E., Cumming, Graeme S., Jackson, Jeremy B.C., Kleypas, Joanie, van de Leemput, Ingrid A., Lough, Janice M., Morrison, Tiffany H., Palumbi, Stephen R., van Nes, Egbert H., and Scheffer, Marten (2017) Coral reefs in the Anthropocene. Nature, 546 (7656). pp. 82-90.

Schaffelke, Britta, Collier, Catherine, Kroon, Frederieke, Lough, Janice, McKenzie, Len, Ronan, Mike, Uthicke, Sven, and Brodie, Jon (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 1: the condition of coastal and marine ecosystems of the Great Barrioer Reef and their responses to water quality and disturbances. Report Section. State of Queensland.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

Lough, Janice (2016) Coral reefs: turning back time. Nature, 531. pp. 314-315.

Lough, J.M., Cantin, N.E., Benthuysen, J.A., and Cooper, T.F. (2016) Environmental drivers of growth in massive Porites corals over 16 degrees of latitude along Australia's northwest shelf. Limnology and Oceanography, 61 (2). pp. 684-700.

Albright, Rebecca, Anthony, Kenneth R.N., Baird, Mark, Beeden, Roger, Byrne, Maria, Collier, Catherine, Dove, Sophie, Fabricius, Katharina, Hoegh-Guldberg, Ove, Kelly, Ryan P., Lough, Janice, Mongin, Mathieu, Munday, Philip L., Pears, Rachel J., Russell, Bayden D., Tilbrook, Bronte, and Abal, Eva (2016) Ocean acidification: linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management, 182. pp. 641-650.

Su, Ruixia, Lough, J.M., and Sun, Donghuai (2016) Variations in massive Porites growth rates at Hainan Island, northern South China Sea. Marine Ecology Progress Series, 546. pp. 47-60.

Madin, Joshua S., Anderson, Kristen D., Andreasen, Magnus Heide, Bridge, Tom C.L., Cairns, Stephen d., Connolly, Sean R., Darling, Emily S., Diaz, Marcela, Falster, Daniel S., Franklin, Erik C., Gates, Ruth, Hoogenboom, Mia O., Huang, Danwei, Keith, Sally A., Kosnik, Matthew A., Kuo, Chao-Yang, Lough, Janice M., Lovelock, Catherine E., Luiz, Osmar, Martinelli, Julieta, Mizerek, Toni, Pandolfi, John M., Pochon, Xavier, Pratchett, Morgan S., Putnam, Hollie M., Roberts, T. Edward, Stat, Michael, Wallace, Carden C., Widman, Elizabeth, and Baird, Andrew H. (2016) The coral trait database: a curated database of trait information for coral species from the global oceans. Scientific Data, 3. 160017. pp. 1-21.

Zinke, J., Hoell, A., Lough, J.M., Feng, M., Kuret, A.J., Clarke, H., Ricca, V., Rankenburg, K., and McCulloch, M.T. (2015) Coral record of southeast Indian Ocean marine heatwaves with intensified Western Pacific temperature gradient. Nature Communications, 6. 8562.

Lough, J.M., Lewis, S.E., and Cantin, N.E. (2015) Freshwater impacts in the central Great Barrier Reef: 1648–2011. Coral Reefs, 34 (3). pp. 739-751.

Pratchett, Morgan S., Anderson, Kristen D., Hoogenboom, Mia O., Windman, Elizabeth, Baird, Andrew H., Pandolfi, John M., Edmunds, Peter J., and Lough, Janice M. (2015) Spatial, temporal and taxonomic variation in coral growth: implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology, 53. pp. 215-295.

Lough, J.M., Llewellyn, L.E., Lewis, S.E., Turney, C.S.M., Palmer, J.G., Cook, C.G., and Hogg, A.G. (2014) Evidence for suppressed mid-Holocene northeastern Australian monsoon variability from coral luminescence. Paleoceanography, 29 (6). pp. 581-594.

Bell, Johann D., Ganachaud, Alexandre, Gehrke, Peter C., Griffiths, Shane P., Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Matear, Richard J., Pickering, Timothy D., Pratchett, Morgan S., Sen Gupta, Alex, Senina, Inna, and Waycott, Michelle (2013) Mixed responses of tropical Pacific fisheries and aquaculture to climate change. Nature Climate Change, 3 (6). pp. 591-599.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., Shields, Graham A., Renema, Willem, Lough, Janice M., and Jacobsen, Geraldine (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32.

Llewellyn, Lyndon E., Everingham, Yvette L., and Lough, Janice M. (2012) Pharmacokinetic modelling of multi-decadal luminescence time series in coral skeletons. Geochimica et Cosmochimica Acta, 83. pp. 263-271.

Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.

Bell, Johann D., Andrew, Neil L., Batty, Michael J., Chapman, Lindsay B., Dambacher, Jeffrey M., Dawson, Brian, Ganachaud, Alexandre S., Gehrke, Peter C., Hampton, John, Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Kinch, Jeff P., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Pickering, Timothy D., Pratchett, Morgan S., Vunisea, Aliti, and Waycott, Michelle (2011) Adapting tropical Pacific fisheries and aquaculture to climate change: management measures, policies and investments. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 803-876.

Bell, Johann D., Johnson, Johanna E., Ganachaud, Alex S., Gehrke, Peter C., Hobday, Alistair J., Hoegh-Guldberg, Ove, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Pickering, Tim, Pratchett, Morgan S., and Waycott, Michelle (2011) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change: summary for Pacific Island Countries and Territories. Secretariat of the Pacific Community, New Caledonia, Noumea.

Hoegh-Guldberg, Ove, Andréfouët, Serge, Fabricius, Katharina E., Diaz-Pulido, Guillermo, Lough, Janice M., Marshall, Paul A., and Pratchett, Morgan S. (2011) Vulnerability of coral reefs in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 251-296.

Bell, Johann, Batty, Mike, Ganachaud, Alex, Gehrke, Peter, Hobday, Alistair, Hoegh-Guldberg, Ove, Johnson, Johanna, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice, Pickering, Tim, Pratchett, Morgan, Sheaves, Marcus, and Waycott, Michelle (2010) Preliminary assessment of the effects of climate change on fisheries and aquaculture in the Pacific. In: Gillett, Robert, (ed.) Fisheries in the Economies of the Pacific Island Countries and Territories. Pacific Studies Series . Asian Development Bank, Manila, Philippines, pp. 451-469.

Baldwin, Ken, England, Matthew, Hoegh-Guldberg, Ove, Hughes, Terry, Karoly, David, Lough, Janice, Lynch, Amanda, McCulloch, Malcolm, Nicholls, Neville, Pitman, Andy, Possingham, Hugh, Quiggin, John, and Steffen, Will (2009) Emissions Reduction Targets and the Great Barrier Reef. Report. Federation of Australian Scientific and Technological Societies, Canberra.

Munday, P.L., Leis, J.M., Lough, J.M., Paris, C.B., Kingsford, M.J., Berumen, M.L., and Lambrechts, J. (2009) Climate change and coral reef connectivity. Coral Reefs, 28 (2). pp. 379-395.

Hoegh-Guldberg, Ove, Hoegh-Guldberg, Hans, Veron, John E., Green, Alison, Gomez, Edgardo D., Lough, Janice, King, Melanie, Ambariyanto , Dr., Hansen, Lara, Cinner, Josh, Dews, Geoff, Russ, Garry, Schuttenberg, Heidi Z., Peñaflor, Eileen L., Eakin, C. Mark, Christensen, Tyler R.L., Abbey, Michael, Areki, Francis, Kosako, Rosemary A., Tewfik, Alexander , and Oliver, Jamie (2009) The Coral Triangle and Climate Change: ecosystems, people and societies at risk. Report. WWF Australia, Sydney, NSW, Australia.

Eakin, C.M., Lough, J.M., and Heron, Scott (2009) Climate variability and change: monitoring data and evidence for increased coral bleaching stress. In: van Oppen, Madeleine J.H., and Lough, Janice M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 41-67.

Howard, W., de Salas, M, Cheal, A., Lough, J., McKinnon, D., Meekan, M., Sweatman, H., Coleman, M., Chambers, L., Dunlop, N., Church, J., Dowdney, J., Feng, M., Griffiths, S., Hemer, M., Hobday, A., Mapstone, B., Matear, R., Poloczanska, E., Richardson, A., Ridgway, K., Risbey, J., Thompson, P., Thresher, R., Weller, E., Saintilan, N., Wilson, S., Lenanton, R., Hosja, W., Moore, P., Wernberg, T., Marshall, P., Connolly, R., McDonald, J., Hill, K., Congdon, B, Devney, C., Fuentes, M., Graham, N., Hamann, M., Hughes, T., Kingsford, M., Munday, P., Pratchett, M., Sheaves, M., Goodwin, I., Raftos, D., Williamson, J., Beardall, J., Brett, S., Waschka, M., Dann, P., Ward, T., Edgar, G., Swadling, K., Connell, S., Russell, B., Lukoschek, V., Havenhand, J., McGregor, S., Jenkins, G., Campbell, A., Steinberg, P., Anthony, K., Lovelock, C., Skilleter, G., Figueira, W., Davidson, J., Hallegraeff, G., Holbrook, N., Booth, D., Doblin, M., Kendrick, G., Smale, D., Parker, L., and Ross, P. (2009) Marine Climate Change in Australia: impacts and adaptation responses: 2009 report card. Report. National Climate Change Adaptation Research Facility (NCCARF).

Cooper, Timothy F., De'Ath, Glenn, Fabricius, Katharina E., and Lough, Janice M. (2008) Declining coral calcification in massive Porites in two nearshore regions of the northern Great Barrier Reef. Global Change Biology, 14 (3). pp. 529-538.

Lewis, Stephen E., Shields, Graham A., Kamber, Balz S., and Lough, Janice M. (2007) A multi-trace element coral record of land-use changes in the Burdekin River catchment, NE Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 246 (2-4). pp. 471-487.

Pelejero, Carles, Calvo, Eva, McCulloch, Malcolm T, Marshall, John F, Gagan, Michael K, Lough, Janice M, and Opdyke, Bradley N (2005) Preindustrial to modern interdecadal variability in coral reef pH. Science, 309 (5744). pp. 2204-2207.

Anthony, Kenneth R.N., Ridd, Peter V., Orpin, Alan R., Larcombe, Piers, and Lough, Janice (2004) Temporal variation of light availability in coastal benthic habitats : effects of clouds, turbidity, and tides. Limnology and Oceanography, 49 (6). pp. 2201-2211.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Card, M., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P.A., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Climate change, human impacts, and the resilience of coral reefs. Science, 301 (5635). pp. 929-933.

McCulloch, Malcolm, Fallon, Stewart, Wyndham, Timothy, Hendy, Erica, Lough, Janice, and Barnes, David (2003) Coral record of increased sediment flux to the inner Great Barrier Reef since European settlement. Nature, 421 (6924). pp. 727-730.

Hendy, Erica J., Gagan, Michael K., Alibert, Chantal A., McCulloch, Malcolm T., Lough, Janice M, and Isdale, Peter J. (2002) Abrupt decrease in tropical Pacific sea surface salinity at end of Little Ice Age. Science, 295 (5559). pp. 1511-1514.

Wolanski, E., Brinkman, R., Spagnol, S., McAllister, F., Marshall, K., McCook, L., Done, T., Lough, J., and Deleersnijder, E. (2002) An ecohydrological model of the Great Barrier Reef. In: Proceedings of the 4th Queensland Environmental Conference. pp. 145-150. From: Environmental Solutions: Meeting the Challenge in 2002, 30-31 May 2002, Brisbane, QLD, Australia.

Tudhope, Alexander W., Colin P., Chilcott, McCulloch, Malcolm T., Cook, Edward R., Chappell, John, Ellam, Robert M., Lea, David W., Lough, Janice M., and Graham B., Shimmield (2001) Variability in the El Niño-Southern Oscillation through a glacial-interglacial cycle. Science, 291 (5508). pp. 1511-1517.