Crandall, Eric D., Riginos, Cynthia, Bird, Chris E., Liggins, Libby, Treml, Eric, Beger, Maria, Barber, Paul H., Connolly, Sean R., Cowman, Peter F., Dibattista, Joseph D., Eble, Jeff A., Magnuson, Sharon F., Horne, John B., Kochzius, M, Lessios, Harilaos A., Liu, Shang Yin Vanson, Ludt, William B., Madduppa, Hawis, Pandolfi, John M., Toonen, Robert J., Diversity of the Indo‐Pacific Network, and Gaither, Michelle R. (2019) The molecular biogeography of the Indo-Pacific: testing hypotheses with multispecies genetic patterns. Global Ecology and Biogeography, 28 (7). pp. 943-960.

Dibattista, Joseph, Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Lozano-Cortes, Diego F., Myers, Robert F., Paulay, Gustav, Rocha, Luiz A., Toonen, Robert J., Westneat, Mark W., and Berumen, Michael L. (2016) On the origin of endemic species in the Red Sea. Journal of Biogeography, 43 (1). pp. 13-30.

DiBattista, Joseph D., Roberts, May B., Bouwmeester, Jessica, Bowen, Brian W., Coker, Darren J., Lozano-Cortés, Diego F., Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Khalil, Maha T., Kochzius, Marc, Myers, Robert F., Paulay, Gustav, Robitzch, Vanessa S.N., Saenz-Agudelo, Pablo, Salas, Eva, Sinclair-Taylor, Tane H., Toonen, Robert J., Westneat, Mark W., Williams, Suzanne T., and Berumen, Michael L. (2016) A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. Journal of Biogeography, 43 (3). pp. 423-439.

von der Heyden, Sophie, Beger, Maria, Toonen, Robert J., van Herwerden, Lynne, Juinio-Meñez, Marie Antonette, Ravago-Gotanco, Rachel, Fauvelot, Cecile, and Bernardi, Giacomo (2014) The application of genetics to marine management and conservation: examples from the Indo-Pacific. Bulletin of Marine Science, 90 (1). pp. 123-158.

Stat, Michael, Baker, Andrew C., Bourne, David G., Correa, Adrienne M.S., Forsman, Zac, Huggett, Megan J., Pochon, Xavier, Skillings, Derek, Toonen, Robert J., van Oppen, Madeleine J.H., and Gates, Ruth D. (2012) Molecular delineation of species in the coral holobiont. Advances in Marine Biology, 63. pp. 1-65.

Gaither, Michelle R., Bowen, Brian W., Toonen, Robert J., Planes, Serge, Messmer, Vanessa, Earle, John, and Robertson, D. Ross (2010) Genetic consequences of introducing allopatric lineages of bluestriped snapper (Lutjanus kasmira) to Hawaii. Molecular Ecology, 19 (6). pp. 1107-1121.