Anthony, Kenneth R. N., Helmstedt, Kate J., Bay, Line K., Fidelman, Pedro, Hussey, Karen E., Lundgren, Petra, Mead, David, McLeod, Ian M., Mumby, Peter J., Newlands, Maxine, Schaffelke, Britta, Wilson, Kerrie A., and Hardisty, Paul E. (2020) Interventions to help coral reefs under global change – a complex decision challenge. PLoS ONE, 15 (8). e0236399.

Glasl, Bettina, Bourne, David G., Frade, Pedro R., Thomas, Torsten, Schaffelke, Britta, and Webster, Nicole S. (2019) Microbial indicators of environmental perturbations in coral reef ecosystems. Microbiome, 7. 94.

Pollock, F. Joseph, Lamb, Joleah B., van de Water, Jeroen A. J. M., Smith, Hillary A., Schaffelke, Britta, Willis, Bette L., and Bourne, David G. (2019) Reduced diversity and stability of coral-associated bacterial communities and suppressed immune function precedes disease onset in corals. Royal Society Open Science, 6 (6). 190355.

Skerratt, J.H., Mongin, M., Baird, M.E., Wild-Allen, K.A., Robson, Barbara, Schaffelke, Britta, Davies, C.H., Richardson, Anthony, Margvelashvili, N., Soja-Wozniak, M., and Steven, Andrew (2019) Simulated nutrient and plankton dynamics in the Great Barrier Reef (2011-2016). Journal of Marine Systems, 192. pp. 51-74.

Ceccarelli, Daniela M., Loffler, Zoe, Bourne, David G., Al Moajil-Cole, Grace S., Boström Einarsson, Lisa, Evans-Illidge, Elizabeth, Fabricius, Katharina, Glasl, Bettina, Marshall, Paul, McLeod, Ian, Read, Mark, Schaffelke, Britta, Smith, Adam K., Jorda, Georgina T., Williamson, David H., and Bay, Line (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology, 26 (5). pp. 827-838.

Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition. Report. State of Queensland.

Schaffelke, Britta, Collier, Catherine, Kroon, Frederieke, Lough, Janice, McKenzie, Len, Ronan, Mike, Uthicke, Sven, and Brodie, Jon (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 1: the condition of coastal and marine ecosystems of the Great Barrioer Reef and their responses to water quality and disturbances. Report Section. State of Queensland.

Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 5: overview of key findings, management implications and knowledge gaps. Report Section. State of Queensland.

van Oppen, Madeleine J.H., Gates, Ruth D., Blackall, Linda L., Cantin, Neal, Chakravarti, Leela J., Chan, Wing Y., Cormick, Craig, Crean, Angela, Damjanovic, Katarina, Epstein, Hannah, Harrison, Peter L., Jones, Thomas A., Miller, Margaret, Pears, Rachel J., Peplow, Lesa M., Raftos, David A., Schaffelke, Britta, Stewart, Kirsten, Torda, Gergely, Wachenfeld, David, Weeks, Andrew R., and Putnam, Hollie M. (2017) Shifting paradigms in restoration of the world's coral reefs. Global Change Biology, 23 (9). pp. 3437-3448.

Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. e1511. pp. 1-24.

Schaffelke, Britta, Brinkman, Richard, Dobbs, Kirstin, Jones, Ross, Kane, Kevin, Negri, Andrew, and Rasheed, Michael (2016) The establishment of a future NESP dredging research investment framework: NESP TWQ Hub Project 1.9. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

McCook, L., Schaffelke, B., Apte, S., Brinkman, R., Brodie, J., Erftemeijer, P., Eyre, B., Hoogerwerf, F., Irvine, I., Jones, R., King, B., Marsh, H., Masini, R., Morton, R., Pitcher, R., Rasheed, M., Sheaves, M., Symonds, A., and Warne, M.St.J. (2015) Synthesis of current knowledge of the biophysical impacts of dredging and disposal on the Great Barrier Reef: report of an Independent Panel of Experts. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). e102498. pp. 1-9.

Brodie, Jon, Waterhouse, Jane, Maynard, Jeffrey, Bennett, John, Furnas, Miles, Devlin, Michelle, Lewis, Stephen, Collier, Catherine, Schaffelke, Britta, Fabricius, Katharina, Petus, Caroline, da Silva, Eduardo, Zeh, Daniel, Randall, Lucy, Brando, Vittorio, McKenzie, Len, O'Brien, Dominique, Smith, Rachael, Warne, Michael, Brinkman, Richard, Tonin, Hemerson, Bainbridge, Zoe, Bartley, Rebecca, Negri, Andrew, Turner, Ryan, Davis, Aaron, Bentley, Christie, Mueller, Jochen, Alvarez-Romero, Jorge, Henry, Nyssa, Waters, David, Yorkston, Hugh, and Tracey, Dieter (2013) Assessment of the relative risk of water quality to ecosystems of the Great Barrier Reef. A report to the Department of the Environment and Heritage Protection, Queensland Government, Brisbane - Report 13/28. Report. James Cook University, Townsville, QLD, Australia.

Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.

Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E.C., Lewis, S.E., Devlin, M.J., Bohnet, I.C., Bainbridge, Z.T., Waterhouse, J., and Davis, A.M. (2012) Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses. Marine Pollution Bulletin, 65 (4-9). pp. 81-100.

Haapkylä, Jessica, Unsworth, Richard K.F., Flavell, Mike, Bourne, David G., Schaffelke, Britta, and Willis, Bette L. (2011) Seasonal rainfall and runoff promote coral disease on an inshore reef. PLoS ONE, 6 (2). e16893. pp. 1-10.

Johnson, Johanna, Brando, Vittorio, Devlin, Michelle, McKenzie, Len, Morris, Sheridan, Schaffelke, Britta, Thompson, Angus, Waterhouse, Jane, and Waycott, M (2011) Reef Rescue Marine Monitoring Program: 2009/2010 synthesis report. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

Schaffelke, Britta, Smith, Jennifer E., and Hewitt, Chad L. (2006) Introduced macroalgae: a growing concern. Journal of Applied Phycology, 18 (3-5). pp. 529-541.

Schaffelke, Britta, and Deane, David (2005) Desiccation tolerance of the introduced marine green alga Codium fragile ssp. Tomentosoides - clues for likely transport vectors. Biological Invasions, 7 (4). pp. 577-587.

Schaffelke, Britta, Mellors, Jane, and Duke, Norman C. (2005) Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin, 51 (1-4). pp. 279-296.

Schaffelke, Britta, Heimann, Kirsten, Marshall, Paul A, and Ayling, A.M. (2004) Blooms of Chrysocystis fragilis on the Great Barrier Reef. Coral Reefs, 23 (4). p. 514.