Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Vu, Nga T.T., Zenger, Kyall R., Guppy, Jarrod L., Sellars, Melony J., Nunes Soares Silva, Catarina N.S., Kjeldsen, Shannon R., and Jerry, Dean R. (2020) Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis. BMC Genomics, 21. 669.

Kjeldsen, Shannon Rikke (2020) Addressing koala conservation management needs: applying novel genomic methods and assessing ecological exchangeability and genetic diversity across the species range. PhD thesis, James Cook University.

Kjeldsen, Shannon R., Raadsma, Herman W., Leigh, Kellie A., Tobey, Jennifer R., Phalen, David, Krockenberger, Andrew, Ellis, William A., Hynes, Emily, Higgins, Damien P., and Zenger, Kyall R. (2019) Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments. Heredity, 122 (5). pp. 525-544.

Al-Breiki, Rufaida Dhuhai, Kjeldsen, Shannon R., Afzal, Hasifa, Al Hinai, Manal Saif, Zenger, Kyall R., Jerry, Dean R., Al-Abri, Mohammed Ali, and Delghandi, Madjid (2018) Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline. BMC Genomics, 19. 690.

Morse, Peter, Kjeldsen, Shannon R., Meekan, Mark G., McCormick, Mark I., Finn, Julian, Huffard, Christine L., and Zenger, Kyall R. (2018) Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod - the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Ecology and Evolution, 8 (4). pp. 2253-2267.

Kjeldsen, Shannon R., Zenger, Kyall R., Leigh, Kellie, Ellis, William, Tobey, Jenifer, Phalen, David, Melzer, Alistair, FitzGibbon, Sean, and Raadsma, Herman W. (2016) Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range. Conservation Genetics, 17 (2). pp. 337-353.