Murphy, Daniel J., Ebach, Malte C., Miller, Joseph T., Laffan, Shawn W., Cassis, Gerasimos, Ung, Visotheary, Thornhill, Andrew H., Kerr, Nunzio, and Tursky, Melinda L. (2019) Do phytogeographic patterns reveal biomes or biotic regions? Cladistics, 35 (6). pp. 654-670.

Gallien, Laure, Thornhill, Andrew H., Zurell, Damaris, Miller, Joseph T., and Richardson, David (2019) Global predictors of alien plant establishment success: combining niche and trait proxies. Proceedings of the Royal Society B, Biological Sciences, 286 (1897).

Speed, James D.M., Skjelbred, Ina Åsnes, Barrio, Isabel C., Martin, Michael D., Berteaux, Dominique, Bueno, C. Guillermo, Christie, Katie S., Forbes, Bruce C., Forbey, Jennifer, Fortin, Daniel, Grytnes, John-Arvid, Hoset, Katrine S., Lecomte, Nicolas, Marteinsdóttir, Bryndís, Mosbacher, Jesper Bruun, Pedersen, Åshild Ønvik, Ravolainen, Virve, Rees, Eileen C., Skarin, Anna, Sokolova, Natalya, Thornhill, Andrew, Tombre, Ingunn, and Soininen, Eeva M. (2019) Trophic interactions and abiotic factors drive functional and phylogenetic structure of vertebrate herbivore communities across the Arctic tundra biome. Ecography, 42 (6). pp. 1152-1163.

Thornhill, Andrew H., Crisp, Michael D., Külheim, Carsten, Lam, Kristy E., Nelson, Leigh A., Yeates, David K., and Miller, Joseph T. (2019) A dated molecular perspective of eucalypt taxonomy, evolution and diversification. Australian Systematic Botany, 32 (1). pp. 29-48.

Miller, Joseph T., Jolley-Rogers, Garry, Mishler, Brent D., and Thornhill, Andrew H. (2018) Phylogenetic diversity is a better measure of biodiversity than taxon counting. Journal of Systematics and Evolution, 56 (6). pp. 663-667.

Purcell, Michaela F., Thornhill, Andrew, Wallenius, Thomas C., Yeates, David, and Rowell, David M. (2018) Plant host relationships of three lineages of the gall-inducing fly Fergusonina Malloch (Diptera: Fergusoninidae) on Eucalyptus L’He´rit. Arthropod-Plant Interactions, 12 (1). pp. 133-145.

Bush, Alex, Catullo, Renee A., Mokany, Karel, Thornhill, Andrew H., Miller, Joseph, and Ferrier, Simon (2018) Truncation of thermal tolerance niches among Australian plants. Global Ecology and Biogeography, 27 (1). pp. 22-31.

Marsh, Karen J., Kulheim, Carsten, Blomberg, Simon P., Thornhill, Andrew H., Miller, Joseph T., Wallis, Ian R., Nicolle, Dean, Salminen, Juha-Pekka, and Foley, William J. (2017) Genus-wide variation in foliar polyphenolics in eucalypts. Phytochemistry, 144. pp. 197-207.

Bui, E.N., Thornhill, A.H., González-Orozco, C.E., Knerr, N., and Miller, J.T. (2017) Climate and geochemistry as drivers of eucalypt diversification in Australia. Geobiology, 15 (3). pp. 427-440.

Scheffer, S.J, Davies, K.A., Taylor, G.S., Thornhill, Andrew, Lewis, M.L., Winkler, I.S., Yeates, D.K., Purcell, M.F., Makinson, J., and Giblin-Davis, R.M. (2017) Phylogenetics of Australasian gall flies (Diptera: Fergusoninidae): evolutionary patterns of host-shifting and gall morphology. Molecular Phylogenetics and Evolution, 115. pp. 140-160.

Laffan, Shawn W., Rosauer, Dan F., Di Virgilio, Giovanni, Miller, Joseph T., González-orozco, Carlos E., Knerr, Nunzio, Thornhill, Andrew H., and Mishler, Brent D. (2016) Range-weighted metrics of species and phylogenetic turnover can better resolve biogeographic transition zones. Methods in Ecology and Evolution, 7 (5). pp. 580-588.

Thornhill, Andrew H., Mishler, Brent D., Knerr, Nunzio J., González-Orozco, Carlos E., Costion, Craig M., Crayn, Darren M., Laffan, Shawn W., and Miller, Joseph T. (2016) Continental-scale spatial phylogenetics of Australian angiosperms provides insights into ecology, evolution and conservation. Journal of Biogegoraphy, 43 (11). pp. 2085-2098.

Macphail, Mike, and Thornhill, Andrew H. (2016) How old are the eucalypts? A review of the microfossil and phylogenetic evidence. Australian Journal of Botany, 64. pp. 579-599.

González-Orozco, Carlos E., Pollock, Laura J., Thornhill, Andrew H., Mishler, Brent D., Knerr, Nunzio, Laffan, Shawn W., Miller, Joseph T., Rosauer, Dan F., Faith, Daniel P., Nipperess, David A., Kujala, Heini, Linke, Simon, Butt, Nathalie, Kulheim, Carsten, Crisp, Michael D., and Gruber, Bernd (2016) Phylogenetic approaches reveal biodiversity threats under climate change. Nature Climate Change, 6 (12). pp. 1110-1115.

Thornhill, Andrew, Ho, Simon, Külheim, Carsten, and Crisp, Mike (2015) Interpreting the modern distribution of Myrtaceae using a dated molecular phylogeny. Molecular Phylogenetics and Evolution, 93. pp. 29-43.

González-Orozco, Carlos E., Mishler, Brent D., Miller, Joseph T., Laffan, Shawn W., Knerr, Nunzio, Unmack, Peter, Georges, Arthur, Thornhill, Andrew H., Rosauer, Dan F., and Gruber, Bernd (2015) Assessing biodiversity and endemism using phylogenetic methods across multiple taxonomic groups. Ecology and Evolution, 5 (22). pp. 5177-5192.

Nagalingum, Nathalie S., Knerr, Nunzio, Laffan, Shawn W., González-Orozco, Carlos E., Thornhill, Andrew H., Miller, Joseph T., and Mishler, Brent D. (2015) Continental scale patterns and predictors of fern richness and phylogenetic diversity. Frontiers in Genetics, 6. 132. pp. 1-14.

Pollock, Laura J., Rosauer, Dan F., Thornhill, Andrew H., Kujala, Heini, Crisp, Michael D., Miller, Joseph T., and McCarthy, Michael A. (2015) Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages. Philosophical Transactions of the Royal Society B: Biological Sciences, 370. 20140007. pp. 1-10.

Quinn, Christopher J., Crowden, Ronald K., Brown, Elizabeth A., Southam, Michael J., Thornhill, Andrew H., and Crayn, Darren M. (2015) A reappraisal of the generic concepts of Epacris, Rupicola and Budawangia (Ericaceae, Epacridoideae, Epacrideae) based on phylogenetic analysis of morphological and molecular data. Australian Systematic Botany, 28 (1). pp. 63-77.

González-Orozco, Carlos E., Thornhill, Andrew H., Knerr, Nunzio, Laffan, Shawn, and Miller, Joseph T. (2014) Biogeographical regions and phytogeography of the eucalypts. Diversity and Distributions, 20 (1). pp. 46-58.

Mishler, Brent D., Knerr, Nunzio, González-orozco, Carlos E., Thornhill, Andrew H., Laffan, Shawn W., and Miller, Joseph T. (2014) Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia. Nature Communications, 5. 4473. pp. 1-10.

González-Orozco, Carlos E., Ebach, Malte C., Laffan, Shawn, Thornhill, Andrew H., Knerr, Nunzio J., Schmidt-Lebuhn, Alexander N., Cargill, Christine C., Clements, Mark, Nagalingum, Nathalie S., Mishler, Brent D., and Miller, Joseph T. (2014) Quantifying phytogeographical regions of Australia using geospatial turnover in species composition. PLoS One, 9 (3). e92558. pp. 1-10.

Bui, Elisabeth N., Thornhill, Andrew, and Miller, Joseph T. (2014) Salt- and alkaline-tolerance are linked in Acacia. Biology Letters, 10 (7). 20140278. pp. 1-4.

Nelson, Leigh A., Davies, Kerrie A., Scheffer, Sonja J., Taylor, Gary S., Purcell, Matthew F., Giblin-Davis, Robin M., Thornhill, Andrew H., and Yeates, David K. (2014) An emerging example of tritrophic coevolution between flies (Diptera: Fergusoninidae) and nematodes (Nematoda: Neotylenchidae) on Myrtaceae host plants. Biological Journal of the Linnean Society, 111 (4). pp. 699-718.

Yeoh, Suat Hui, Ho, Simon Y.W., Thornhill, Andrew H., and Foley, William J. (2013) Regional population expansion in Eucalyptus globulus. Molecular Phylogenetics and Evolution, 68 (3). pp. 498-501.

Purcell, Michaela F., Nelson, Leigh A., Thornhill, Andrew H., and Yeates, David K. (2013) Two new species of Fergusonina Malloch gall fly (Diptera: Fergusoninidae) from leaf bud galls on black sallee (Eucalyptus stellulata) and manna gum (Eucalyptus viminalis). Australian Journal of Entomology, 52 (4). pp. 363-370.

Thornhill, Andrew H., and Macphail, Mike (2012) Fossil myrtaceous pollen as evidence for the evolutionary history of Myrtaceae: a review of fossil Myrtaceidites species. Review of Palaeobotany and Palynology, 176-177. pp. 1-23.

Thornhill, Andrew H., Popple, Lindsay W., Carter, Richard J., Ho, Simon Y.W., and Crisp, Michael D. (2012) Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae. Molecular Phylogenetics and Evolution, 63 (1). pp. 15-27.

Thornhill, Andrew H., and Crisp, Michael D. (2012) Phylogenetic assessment of pollen characters in Myrtaceae. Australian Systematic Botany, 25 (3). pp. 171-187.

Thornhill, Andrew H., Hope, Geoff S., Craven, Lyn A., and Crisp, Michael D. (2012) Pollen morphology of the Myrtaceae. Part 1: tribes Eucalypteae, Lophostemoneae, Syncarpieae, Xanthostemoneae and subfamily Psiloxyloideae. Australian Journal of Botany, 60 (3). pp. 165-199.

Thornhill, Andrew H., Hope, Geoff S., Craven, Lyn A., and Crisp, Michael D. (2012) Pollen morphology of the Myrtaceae. Part 2: tribes Backhousieae, Melaleuceae, Metrosidereae, Osbornieae and Syzygieae. Australian Journal of Botany, 60 (3). pp. 200-224.

Thornhill, Andrew H., Wilson, Peter G., Drudge, Jeff, Barrett, Matthew D., Hope, Geoff S., Craven, Lyn A., and Crisp, Michael D. (2012) Pollen morphology of the Myrtaceae. Part 3: tribes Chamelaucieae, Leptospermeae and Lindsayomyrteae. Australian Journal of Botany, 60 (3). pp. 225-259.

Thornhill, Andrew H., Hope, Geoff S., Craven, Lyn A., and Crisp, Michael D. (2012) Pollen morphology of the Myrtaceae. Part 4: tribes Kanieae, Myrteae and Tristanieae. Australian Journal of Botany, 60 (3). pp. 260-289.

Crisp, Michael D., Burrows, Geoffrey E., Cook, Lyn G., Thornhill, Andrew H., and Bowman, David M.J.S. (2011) Flammable biomes dominated by eucalypts originated at the Cretaceous–Palaeogene boundary. Nature Communications, 2. 193. pp. 1-8.

Thornhill, Andrew H., Harper, Ian S., and Hallam, Neil D. (2008) The development of the digestive glands and enzymes in the pitchers of three Nepenthes species: N. alata, N. tobaica, and N. ventricosa (Nepenthaceae). International Journal of Plant Sciences, 169 (5). pp. 615-624.