Flores-Moreno, Habacuc, Yatsko, Abbey R., Cheesman, Alexander W., Allison, Steven D., Cernusak, Lucas A., Cheney, Rose, Clement, Rebecca A., Cooper, Wendy, Eggleton, Paul, Jensen, Rigel, Rosenfield, Marc, and Zanne, Amy E. (2024) Shifts in internal stem damage along a tropical precipitation gradient and implications for forest biomass estimation. New Phytologist, 241 (3). pp. 1047-1061.

Cooper, Wendy, Zich, Frank, Nauheimer, Lars, Harrison, Melissa, and Crayn, Darren (2024) A revision of Derris and Brachypterum (Leguminosae subfamily Papilionoideae) in Australia. Australian Systematic Botany, 37. SB23030.

Cooper, W.E., Crayn, D.M., and Joyce, E.M. (2023) Aglaia fellii W.E.Cooper & Joyce (Meliaceae), a new species for Cape York Peninsula. Australian Journal of Taxonomy, 23.

Cooper, Wendy (2022) Diospyros venablesii W.E.Cooper (Ebenaceae), a new and endemic species from the Iron Range area, Cape York Peninsula, Queensland. Telopea, 25. pp. 75-79.

Cooper, Wendy, and Zich, Frank (2022) Reinstatement and revision of Kayea Wall. (Calophyllaceae) in Australia, including two new species from Queensland’s Wet Tropics bioregion. Austrobaileya, 12. pp. 1-13.

Cooper, Wendy (2022) Xylosma craynii (Salicaceae), a new and restricted species for Queensland's Wet Tropics Bioregion. Australian Journal of Taxonomy, 3.

Cooper, Wendy, and Forster, Paul (2021) Aglaia monticola W.E.Cooper & P.I.Forst. (Meliaceae), a new species for Queensland’s Wet Tropics. Austrobaileya, 11. pp. 80-86.

Cooper, Wendy E., Crayn, Darren M., Zich, Frank A., Miller, Rebecca E., Harrison, Melissa, and Nauheimer, Lars (2019) A review of Austrocallerya and Pongamia (leguminosae subfamily Papilionoideae) in Australia, and the description of a new monotypic genus, Ibatiria. Australian Systematic Botany, 32 (4). pp. 363-384.

Cooper, Wendy (2017) Thismia hawkesii W.E.Cooper and T. lanternatus W.E.Cooper (Thismiaceae), two new fairy lantern species from the Wet Tropics Bioregion, Queensland, Australia. Austrobaileya, 10. pp. 130-138.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

de Boer, Hugo J., Steffen, Karin, and Cooper, Wendy E. (2015) Sunda to Sahul dispersals inTrichosanthes(Cucurbitaceae): a dated phylogeny reveals five independent dispersal events to Australasia. Journal of Biogeography, 42 (3). pp. 519-531.

Cooper, Wendy (2015) A taxonomic revision of Cynometra L. (Fabaceae) in Australia with a new species from the wet tropics of Queensland and a range extension to the mainland. Austrobaileya, 9 (3). pp. 393-403.

Cooper, W.E. (2013) Cryptocarya cercophylla W.E.Cooper (Lauraceae), a new species from Queensland's Wet Tropics. Austrobaileya, 9 (1). pp. 75-79.

Cooper, W.E. (2013) A taxonomic revision of Garcinia L. (Clusiaceae) in Australia, including four new species from tropical Queeensland. Austrobaileya, 9 (1). pp. 1-29.

Cooper, W.E., and de Boer, H.J. (2011) A taxonomic revision of Trichosanthes L. (Cucurbitaceae) in Australia, including one new species from the Northern Territory. Austrobaileya, 8 (3). pp. 364-386.