Cooper, W.E., Crayn, D.M., and Joyce, E.M. (2023) Aglaia fellii W.E.Cooper & Joyce (Meliaceae), a new species for Cape York Peninsula. Australian Journal of Taxonomy, 23.

Cooper, Wendy (2022) Diospyros venablesii W.E.Cooper (Ebenaceae), a new and endemic species from the Iron Range area, Cape York Peninsula, Queensland. Telopea, 25. pp. 75-79.

Cooper, Wendy, and Zich, Frank (2022) Reinstatement and revision of Kayea Wall. (Calophyllaceae) in Australia, including two new species from Queensland’s Wet Tropics bioregion. Austrobaileya, 12. pp. 1-13.

Cooper, Wendy (2022) Xylosma craynii (Salicaceae), a new and restricted species for Queensland's Wet Tropics Bioregion. Australian Journal of Taxonomy, 3.

Cooper, Wendy, and Forster, Paul (2021) Aglaia monticola W.E.Cooper & P.I.Forst. (Meliaceae), a new species for Queensland’s Wet Tropics. Austrobaileya, 11. pp. 80-86.

Cooper, Wendy E., Crayn, Darren M., Zich, Frank A., Miller, Rebecca E., Harrison, Melissa, and Nauheimer, Lars (2019) A review of Austrocallerya and Pongamia (leguminosae subfamily Papilionoideae) in Australia, and the description of a new monotypic genus, Ibatiria. Australian Systematic Botany, 32 (4). pp. 363-384.

Cooper, Wendy (2017) Thismia hawkesii W.E.Cooper and T. lanternatus W.E.Cooper (Thismiaceae), two new fairy lantern species from the Wet Tropics Bioregion, Queensland, Australia. Austrobaileya, 10. pp. 130-138.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

de Boer, Hugo J., Steffen, Karin, and Cooper, Wendy E. (2015) Sunda to Sahul dispersals inTrichosanthes(Cucurbitaceae): a dated phylogeny reveals five independent dispersal events to Australasia. Journal of Biogeography, 42 (3). pp. 519-531.

Cooper, Wendy (2015) A taxonomic revision of Cynometra L. (Fabaceae) in Australia with a new species from the wet tropics of Queensland and a range extension to the mainland. Austrobaileya, 9 (3). pp. 393-403.

Cooper, W.E. (2013) Cryptocarya cercophylla W.E.Cooper (Lauraceae), a new species from Queensland's Wet Tropics. Austrobaileya, 9 (1). pp. 75-79.

Cooper, W.E. (2013) A taxonomic revision of Garcinia L. (Clusiaceae) in Australia, including four new species from tropical Queeensland. Austrobaileya, 9 (1). pp. 1-29.

Cooper, W.E., and de Boer, H.J. (2011) A taxonomic revision of Trichosanthes L. (Cucurbitaceae) in Australia, including one new species from the Northern Territory. Austrobaileya, 8 (3). pp. 364-386.