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Andutta, Fernando Pinheiro, de Miranda, Luiz Bruner, Schettini, Carlos Augusto Franca, Siegle, Eduardo, da Silva, Mario Pereira, Izumi, Vitor Massaki, and Chagas, Felipe Murai (2013) Temporal variations of temperature, salinity and circulation in the Peruipe river estuary (nova Vicosa, BA). Continental Shelf Research, 70. pp. 36-45.
Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.
Berkeley, Andrew, Perry, Chris, T., and Smithers, Scott G. (2009) Taphonomic signatures and patterns of test degradation on tropical, intertidal benthic foraminifera. Marine Micropaleontology , 73 (3). pp. 148-163.
Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Mike (2007) Coral reef sensor network deployment for collecting real time 3-D temperature data with correlation to plankton assemblages. In: Proceedings of International Conference on Sensor Technologies and Applications, pp. 204-209. From: SENSORCOMM 2007: International Conference on Sensor Technologies and Applications, 14-20 October 2007, Valencia, Spain.
Beaman, Robin J., and Harris, Peter J. (2007) Geophysical variables as predictors of megabenthos assemblages from the northern Great Barrier Reef, Australia. In: Todd, B.J., and Greene, H.G., (eds.) Mapping the seafloor for habitat characterization. Geological Association of Canada special paper ; 47 . Geological Association of Canada, St. Johns, Canada, pp. 247-264.
Bode, Michael, Bode, Lance, and Armsworth, Paul R. (2006) Larval dispersal reveals regional sources and sinks in the Great Barrier Reef. Marine Ecology Progress Series, 308. pp. 17-25.
Bode, Lance, and Mason, Luciano B. (2005) Evaluation of a nonlinear reef parametrisation for steady flows. ANZIAM Journal, 46 (E). pp. 1017-1034.
Bathgate, Jonathan S., and Heron, Mal (2005) Swell waves monitored by HF ocean surface radar at Tweed Heads and Bass Strait. In: Proceedings of the 17th Australasian Coastal and Ocean Engineering Conference Conference and the 10th Australasian Port and Harbour Conference, pp. 191-196. From: 2005 Coasts and Ports Australasian Conference, 20-23 September 2005, Adelaide, SA, Australia.
Broadbent, Andrew D., and Jones, Graham B. (2004) DMA and DMSP in mucus ropes, coral mucus, surface films and sediment pore waters from coral reefs in the Great Barrier Reef. Marine and Freshwater Research, 55 (8). pp. 849-855.
Burrage, D.M., Steinberg, C.R., Mason, L.B., and Bode, L. (2003) Tidal corrections for TOPEX altimetry in the Coral Sea and Great Barrier Reef Lagoon: comparisons with long-term tide gauge records. Journal of Geophysical Research: oceans, 108 (C7). 34-1.
Burrage, D.M., Heron, M.L., Hacker, J.M., Miller, J.L., Stieglitz, T.C., Steinberg, C.R., and Prytz, A. (2003) Structure and influence of tropical river plumes in the Great Barrier Reef: application and performance of an airborne sea surface salinity mapping system. Remote Sensing of Environment, 85 (2). pp. 204-220.
Bathgate, J.S., Heron, M.L., and Prytz, A. (2003) Swell wave direction off Tweed Heads monitored by HF Ocean Surface Radar. In: Proceedings of the Coasts and Ports Australiasian Conference 2003, pp. 1-8. From: Coasts and Ports Australiasian Conference 2003, 9-12 September 2003, Auckland, New Zealand.
Burrage, D.M., Heron, M.L., Hacker, J.M., Stieglitz, T.C., Steinberg, C.R., and Prytz, A. (2002) Evolution and dynamics of tropical river plumes in the Great Barrier Reef: an integrated remote sensing and in situ study. Journal of Geophysical Research: oceans, 107 (12). pp. 1-17.
Berkelmans, Ray, Hendee, Jim C., Marshall, Paul A., Ridd, Peter V., Orpin, Alan R., and Irivine, Duncan (2002) Automatic weather stations: tools for managing and monitoring potential impacts to coral reefs. Marine Technology Society Journal, 36 (1). pp. 29-38.
Burrage, Derek M., Goodberlet, Mark A., and Heron, Malcom (2002) Simulating passive microwave radiometer designs using Simulink. SIMULATION: Transactions of The Society for Modeling and Simulation International, 78 (1). pp. 36-55.
Cetina-Heredia, Paulina, and Connolly, Sean R. (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593-605.
Choukroun, Séverine (2010) The surface circulation of the Coral Sea and Great Barrier Reef. PhD thesis, James Cook University.
Cheal, Alistair J., Wilson, Shaun K., Emslie, Michael J., Dolman, Andrew M., and Sweatman, Hugh (2008) Responses of reef fish communities to coral declines on the Great Barrier Reef. Marine Ecology Progress Series, 372. pp. 211-223.
Cooper, Timothy F., Ridd, Peter V., Ulstrup, Karin E., Humphrey, Craig, Slivokoff, Matthew, and Fabricius, Katharina E. (2008) Temporal dynamics in coral bioindicators for water quality on coastal coral reefs of the Great Barrier Reef. Marine and Freshwater Research, 59 (8). pp. 703-716.
Cornell, Howard V., Karlson, Ronald H., and Hughes, Terence P. (2007) Scale-dependent variation in coral community similarity across sites, islands, and island groups. Ecology, 88 (7). pp. 1707-1715.
Carter, R.M., Fulthorpe, C.S., and Lu, H. (2004) Canterbury drifts at ocean drilling program site 1119, New Zealand: climatic modulation of southwest Pacific intermediate water flows since 3.9 Ma. Geology, 32 (11). pp. 1005-1008.
Didenkulova, I., Pelinovsky, E., Soomere, T., and Parnell, K.E. (2011) Beach profile change caused by vessel wakes and wind waves in Tallinn Bay, the Baltic Sea. Journal of Coastal Research, SI 64. pp. 60-64.
Depczynski, Martial, and Bellwood, David R. (2005) Wave energy and spatial variability in community structure of small cryptic coral reef fishes. Marine Ecology Progress Series, 303. pp. 283-293.
Dempster, Tim, and Kingsford, Michael J. (2004) Drifting objects as habitat for pelagic juvenile fish off New South Wales, Australia. Marine and Freshwater Research, 55 (7). pp. 675-687.
Depczynski, M., and Bellwood, D.R. (2004) Microhabitat utilisation patterns in cryptobenthis coral reef fish communities. Marine Biology, 145 (3). pp. 455-463.
de Silva Samarasinghe, J.R., Bode, L., and Mason, L.B. (2003) Modelled response of Gulf St Vincent (South Australia) to evaporation, heating and winds. Continental Shelf Research, 23 (14). pp. 1285-1313.
Faichney, Iain Duncan Eise (2010) The geology of the submerged reefs in the Maui-Nui complex, Hawaii. PhD thesis, James Cook University.
Gordon, Matthew, and Seymour, Jamie (2012) Growth, development and temporal variation in the onset of six Chironex fleckeri medusae seasons: a contribution to understanding jellyfish ecology. PLoS One, 7 (2). pp. 1-11.
Gusmão, Luiz Felipe Mendes, and Mckinnon, A. David (2011) Nucleic acid indices of egg production in the tropical copepod Acartia sinjiensis. Journal of Experimental Marine Biology and Ecology, 396 (2). pp. 122-137.
Gal, Y., Browne, M,, and Lane, C. (2011) Automatic estimation of nearshore wave height from video timestacks. In: Proceedings of 2011 International Conference on Digital Image Computing: techniques and applications, pp. 364-369. From: DICTA 2011 International Conference on Digital Image Computing: techniques and applications, 6-8 December 2011, Noosa, QLD, Australia.
Horne, J.B., and van Herwerden, L. (2013) Long-term panmixia in a cosmopolitan Indo-Pacific coral reef fish and a nebulous genetic boundary with its broadly sympatric sister species. Journal of Evolutionary Biology, 26 (4). pp. 783-799.
Heron, Mal, Mantovanelli, Allessandra, Massa, Diane Di, and Heron, Scott (2012) Coastal ocean radars applied to coral reef science and management. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.
Hoeke, Ron Karl (2010) An investigation of wave-dominated coral reef hydrodynamics. PhD thesis, James Cook University.
Heron, Mal L., Jaffrés, Jasmine B.D., and Middleditch, Andrew (2010) Wave and wind parameters from HF ocean radar. In: Proceedings of the Australian Wind Waves Research Science Symposium, pp. 110-117. From: Australian Wind Waves Research Science Symposium, 19-20 May 2010, Gold Coast, QLD, Australia.
Hancock, Haidi J.L., Dickens, Gerald R., Thomas, Ellen, and Blake, Kevin L. (2007) Reappraisal of early Paleogene CCD curves: foraminiferal assemblages and stable carbon isotopes across the carbonate facies of Perth Abyssal Plain. International Journal of Earth Sciences, 96 (5). pp. 925-946.
Heron, Malcolm L., Skirving, William J., and Michael, Kelvin J. (2006) Short-wave ocean wave slope models for use in remote sensing data analysis. IEEE: transactions on geoscience and remote sensing, 44 (7). pp. 1962-1973.
Hua, Quan, Woodroffe, Colin D., Smithers, Scott G., Barbetti, Mike, and Fink, David (2005) Radiocarbon in corals from the Cocos (Keeling) Islands and implications for Indian Ocean circulation. Geophysical Research Letters, 32 (21602). pp. 1-4.
Heron, Mal L. (2005) The role of HF ocean surface radar in Australia as a long-term coastal ocean monitoring facility. In: Proceedings of the 17th Australasian Coastal and Ocean Engineering Conference Conference and the 10th Australasian Port and Harbour Conference, pp. 185-190. From: 2005 Coasts and Ports Australasian Conference, 20-23 September 2005, Adelaide, SA, Australia.
Hardy, Tom, Mason, Luciano, McConochie, Jason, and Bode, Lance (2004) Modeling suspended sediment during construction in Great Barrier Reef world heritage area. Journal of Environmental Engineering, 130 (9). pp. 1021-1031.
Hua, Quan, Woodroffe, Colin D., Barbetti, Mike, Smithers, Scott G., Zoppi, Ugo, and Fink, David (2004) Marine reservoir correction for the Cocos (Keeling) Islands, Indian Ocean. Radiocarbon, 46 (2). pp. 603-610.
Heron, M.L., Prytz, A., Stieglitz, T., and Burrage, D.M. (2004) Remote sensing of sea surface salinity: a case study in the Burdekin River, north-eastern Australia. Gayana, 68 (2). pp. 284-288.
Heron, Mal, and Prytz, Arnstein (2003) Ocean surface radar current measurements in the surf break zone at Coffs Harbour. In: Proceedings of the Coasts and Ports Australiasian Conference 2003, pp. 1-8. From: Coasts and Ports Australiasian Conference 2003, 9-12 September 2003, Auckland, New Zealand.
Heron, Malcolm L. (2002) Applying a unified directional wave spectrum to the remote sensing of wind wave directional spreading. Canadian Journal of Remote Sensing, 28 (3). pp. 346-353.
Heron, Malcolm L., and Prytz, Arnstein (2002) Wave height and wind direction from the HF coastal ocean surface radar. Canadian Journal of Remote Sensing, 28 (3). pp. 385-393.
Johansen, J.L., and Jones, G.P. (2013) Sediment-induced turbidity impairs foraging performance and prey choice of planktivorous coral reef fishes. Ecological Applications, 23 (6). pp. 1504-1517.
Jaffrés, Jasmine B.D. (2013) Mixed layer depth seasonality within the Coral Sea based on Argo data. PLoS ONE, 8 (4). pp. 1-13.
Johnstone, Robert (2013) Creating a coral symphony: sound art and sonification. Etropic: electronic journal of studies in the tropics, 12 (2). pp. 191-196.
Jaffrés, Jasmine Bernadette Denise (2011) The oceanographic and geochemical effects of mixed layer depth variability and increasing anthropogenic CO₂ on the inorganic carbon system of the Coral Sea. PhD thesis, James Cook University.
Jaffrés, Jasminé B.D., Heron, Malcolm L., Banner, Michael L., Middleditch, Andrew, Steinberg, Craig R., and Durrant, Tom (2010) Evaluation of ADCP wave, WAVEWATCH III and HF radar data on the GBR. In: Proceedings of the Australian Wind Waves Research Science Symposium, pp. 114-117. From: Australian Wind Waves Research Science Symposium, 19-20 May 2010, Gold Coast, QLD, Australia.
Jones, Graham, Curran, Mark, Broadbent, Andrew, King, Stacey, Fischer, Esther, and Jones, Rosemary (2007) Factors affecting the cycling of dimethylsulfide and dimethylsulfoniopropionate in coral reef waters of the Great Barrier Reef. Environmental Chemistry, 4 (5). pp. 310-322.
Kingsford, M.J., Seymour, J.E., and O'Callaghan, M.D. (2012) Abundance patterns of cubozoans on and near the Great Barrier Reef. Hydrobiologia, 690 (1). pp. 257-268.
Kurennoy, D., Parnell, K.E., and Soomere, T. (2011) Fast-ferry generated waves in South-West Tallinn Bay. Journal of Coastal Research, SI 64. pp. 165-169.
Kosnik, Matthew A., Kaufman, Darrell S., and Hua, Quan (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: I. Age calibration curves. Quaternary Geochronology, 3 (4). pp. 308-327.
Kosnik, Matthew A., and Kaufman, Darrell S. (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: II. Data screening. Quaternary Geochronology, 3 (4). pp. 328-341.
Kosnik, Matthew A., Hua, Quan, Jacobsen, Geraldine E., Kaufman, Darrell S., and Wust, Raphael A. (2007) Sediment mixing and stratigraphic disorder revealed by the age-structure of Tellina shells in Great Barrier Reef sediment. Geology, 35 (9). pp. 811-814.
Kench, Paul S., Nichol, Scott L., McLean, Roger F., Smithers, Scott G., and Brander, Robert W. (2007) Impact of the Sumatran tsunami on the geomorphology and sediments of reef islands: South Maalhosmadulu Atoll, Maldives. Atoll Research Bulletin, 544. pp. 105-134.
Karlson, Ronald H., Cornell, Howard V., and Hughes, Terence P. (2007) Aggregation influences coral species richness at multiple spatial scales. Ecology, 88 (1). pp. 170-177.
Kench, Paul S., Brander, Robert W., Parnell, Kevin E., and Mclean, Roger F. (2006) Wave energy gradients across a Maldivian atoll: implications for island geomorphology. Geomorphology, 81 (1-2). Jan-17.
Kerswell, Ailsa P. (2006) Global biodiversity patterns of benthic marine algae. Ecology, 87 (10). pp. 2479-2488.
Liddelow, Megan J., and Kingsford, Michael J. (2006) The attraction of presettlement reef fish to FADs with live and dead coral. In: Proceedings of the 10th International Coral Reef Symposium, pp. 403-408. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.
Lewis, Stephen Edward (2005) Environmental trends in the GBR lagoon and Burdekin River catchment during the mid-Holocene and since European settlement using Porites coral records, Magnetic Island, QLD. PhD thesis, James Cook University.
Messmer, Vanessa, Jones, Geoffrey, Munday, Philip, and Planes, Serge (2012) Concordance between genetic and species diversity in coral reef fishes across the pacific ocean biodiversity gradient. Evolution, 66 (12). pp. 3902-3917.
Mantovanelli, Allessandra, and Heron, Mal (2012) Radar-based tracking of pollutants/larvae in the Coral Sea. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
McClounan, S., and Seymour, J. (2012) Venom and cnidome ontogeny of the cubomedusae Chironex fleckeri. Toxicon, 60 (8). pp. 1335-1341.
Messmer, Vanessa, Jones, Geoffrey P., Munday, Philip L., Holbrook, Sally J., Schmitt, Russell J., and Brooks, Andrew J. (2011) Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology, 92 (12). pp. 2285-2298.
Mantovanelli, A., and Ridd, P.V. (2008) SEDVEL: an underwater balance for measuring in situ settling velocities and suspended cohesive sediment concentrations. Journal of Sea Research, 60 (4). pp. 235-245.
Meekan, M.G., Carleton, J.H., Steinberg, C.R., McKinnon, A.D., Brinkman, R., Doherty, P.J., Halford, A., Duggan, S., and Mason, L. (2006) Turbulent mixing and mesoscale distributions of late-stage fish larvae on the NW shelf of Western Australia. Fisheries Oceanography, 15 (1). pp. 44-59.
Mantovanelli, Alessandra (2005) A new approach for measuring in situ the concentration and settling velocity of suspended cohesive sediment. PhD thesis, James Cook University.
Mercurio, Philip, Burns, Kathryn A., and Negri, Andrew (2004) Testing the ecotoxicology of vegetable versus mineral based lubricating oils: 1. Degradation rates using tropical marine microbes. Environmental Pollution, 129 (2). pp. 165-173.
Noonan, Sam H.C., Jones, Geoffrey P., and Pratchett, Morgan S. (2012) Coral size, health and structural complexity: effects on the ecology of a coral reef damselfish. Marine Ecology Progress Series, 456. pp. 127-137.
Nott, Jonathan (2003) Waves, coastal boulder deposits and the importance of the pre-transport setting. Earth and Planetary Science Letters, 210 (1-2). pp. 269-276.
Neil, David T., Orpin, Alan R., Ridd, Peter V., and Yu, Bofu (2002) Sediment yield and impacts from river catchments to the Great Barrier Reef lagoon. Marine and Freshwater Research, 53 (4). pp. 733-752.
Pandolfi, John, Connolly, Sean, Marshall, Dustin J., and Cohern, Anne L. (2011) The future of coral reefs - a response. Science, 334 (6062). pp. 1495-1496.
Page, Michael C. (2006) Late Pleistocene-Holocene deposition of mixed siliciclastic-carbonate sediments on slopes east of the Great Barrier Reef, northeast Australian margin. PhD thesis, James Cook University.
Pitt, Kylie A, Koop, Klaus, Rissik, David, and Kingsford, M.J. (2004) The ecology of scyphozoan jellyfish in Lake Illawarra. Wetlands (Australia), 21 (2). pp. 115-123.
Pecl, Gretta (2004) The in situ relationships between season of hatching, growth and condition in the southern calamary, Sepioteuthis australis. Marine and Freshwater Research, 55 (4). pp. 429-438.
Patterson, Heather M., Kingsford, Michael J., and McCulloch, Malcolm T. (2004) The influence of oceanic and lagoonal plume waters on otolith chemistry. Canadian Journal of Fisheries and Aquatic Sciences, 61 (6). pp. 898-904.
Patterson, Heather M., Kingsford, Michael J., and McCulloch, Malcolm T. (2004) Elemental signatures of Pomacentrus coelestis otoliths at multiple spatial scales on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 270. pp. 229-239.
Page, Michael C., Dickens, Gerald R., and Dunbar, Gavin B. (2003) Tropical view of Quaternary sequence stratigraphy: siliciclastic accumulation on slopes east of the Great Barrier Reef since the Last Glacial Maximum. Geology, 31 (11). pp. 1013-1016.
Saggiomo, Silvia L.A., and Seymour, Jamie E. (2012) Cardiotoxic effects of venom fractions from the Australian box jellyfish Chironex fleckeri on human myocardiocytes. Toxicon, 60 (3). pp. 391-395.
Soomere, Tarmo, Parnell, Kevin E., and Didenkulova, Ira (2011) Water transport in wake waves from high-speed vessels. Journal of Marine Systems, 88 (1). pp. 74-81.
Smithers, Scott G., and Woodroffe, Colin D. (2001) Coral microatolls and 20th century sea level in the eastern Indian Ocean. Earth and Planetary Science Letters, 191 (1-2). pp. 173-184.
Smithers, Scott G., and Woodroffe, Colin D. (2000) Microatolls as sea-level indicators on a mid-ocean atoll. Marine Geology, 168 (1-4). pp. 61-78.
Trevena, Anne J., Jones, Graham B., Wright, Simon W., and van den Enden, Rick L. (2003) Profiles of dimethylsulphoniopropionate (DMSP), algal pigments, nutrients, and salinity in the fast ice of Prydz Bay, Antarctica. Journal of Geophysical Research: oceans, 108 (C5). pp. 1-11.
Thomas, Severine, Ridd, Peter V., and Smith, Peter J. (2002) New instrumentation for sediment dynamics studies. Marine Technology Society Journal, 36 (1). pp. 55-58.
Thomson, Alexandra C.G., York, Paul H., Smith, Timothy M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts. (In Press)
Wen, Colin K., Almany, Glenn R., Williamson, David H., Pratchett, Morgan S., and Jones, Geoffrey P. (2012) Evaluating the effects of marine reserves on diet, prey availability and prey selection by juvenile predatory fishes. Marine Ecology Progress Series, 469. pp. 133-144.
Wenger, Amelia S., Johansen, Jacob L., and Jones, Geoffrey P. (2012) Increasing suspended sediment reduces foraging, growth and condition of a planktivorous damselfish. Journal of Experimental Marine Biology and Ecology, 428. pp. 43-48.
Wang, Yong-Hong, Ridd, Peter V., Wu, Hua-Lin, Wu, Jia-Xue, and Shen, Huan-Ting (2008) Long-term morphodynamic evolution and the equilibrium mechanism of a flood channel in the Yangtze Estuary (China). Geomorphology, 99 (1-4). pp. 130-138.
Webster, Jody M., Beaman, Robin J., Bridge, Thomas, Davies, Peter, Byrne, Maria, Williams, Stefan, Manning, Phil, Pizarro, Oscar, Thornborough, Kate, Woolsey, Erika, Thomas, Alex, and Tudhope, Sandy (2008) From corals to canyons: the Great Barrier Reef margin. EOS, 89 (24). pp. 217-218.
Wolanski, Eric (2006) The Environment in Asia Pacific Harbours. Springer, Dordrecht, The Netherlands.
Waycott, Michelle, Procaccini, Gabriele, Les, Donald H., and Reusch, Thorsten B.H. (2006) Seagrass evolution, ecology and conservation: a genetic perspective. In: Larkum, Anthony W.D., Orth, Robert J., and Duarte, Carlos M., (eds.) Seagrasses: biology, ecology and conservation. Springer, Dordrecht, The Netherlands, pp. 25-50.
Williams, J.J., O'Connor, B.A., Arens, S.M., Abadie, S., Bell, P., Balouin, Y., Van Boxel, J.H., Do Carmo, A.J., Davidson, M., Ferreira, O., Heron, M., Howa, H., Hughes, Z., Kaczmarek, L.M., Kim, H., Morris, B., Nicholson, J., Pan, S., Salles, P., Silva, A., Smith, J., Soares, C., and Vila-Concejo, A. (2003) Tidal inlet function: field evidence and numerical simulation in the India project. Journal of Coastal Research, 19 (1). pp. 189-211.