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Mackay, Stephen J., Arthington, Angela H., and James, Cassandra S. (2014) Classification and comparison of natural and altered flow regimes to support an Australian trial of the Ecological Limits of Hydrologic Alteration framework. Ecohydrology, 7 (6). pp. 1485-1507.
Agha, Ramsy, Lezcano, María Ángeles, Labrador, María del Mar, Cirés, Samuel, and Quesada, Antonio (2014) Seasonal dynamics and sedimentation patterns of Microcystis oligopeptide-based chemotypes reveal subpopulations with different ecological traits. Limnology and Oceanography, 59 (3). pp. 861-871.
Blanchette, Melanie L., Davis, Aaron M., Jardine, Timothy D., and Pearson, Richard G. (2014) Omnivory and opportunism characterize food webs in a large dry-tropics river system. Freshwater science, 33 (1). pp. 142-158.
Kaserzon, Sarit L., Hawker, Darryl W., Booij, Kees, O'Brien, Dominique S., Kennedy, Karen, Vermeirssen, Etienne L.M., and Mueller, Jochen F. (2014) Passive sampling of perfluorinated chemicals in water: in-situ calibration. Environmental Pollution, 186. pp. 98-103.
O'Grady, Damien, and LeBlanc, Marc (2014) Radar mapping of broad-scale inundation: challenges and opportunities in Australia. Stochastic Environmental Research and Risk Assessment, 28 (1). pp. 29-38.
Petus, Caroline, Lewis, Megan, and White, Davina (2013) Monitoring temporal dynamics of Great Artesian Basin wetland vegetation, Australia, using MODIS NDVI. Ecological Indicators, 34. pp. 41-52.
Connolly, N.M., and Pearson, R.G. (2013) Nutrient enrichment of a heterotrophic stream alters leaf litter nutritional quality and shredder physiological condition via the microbial pathway. Hydrobiologia, 718 (1). pp. 85-92.
Thiem, Jason D., Broadhurst, Ben T., Lintermans, Mark, Ebner, Brendan C., Clear, Rhian C., and Wright, Daniel (2013) Seasonal differences in the diel movements of Macquarie perch (Macquaria australasica) in an upland reservoir. Ecology of Freshwater Fish, 22 (1). pp. 145-156.
Broadhurst, B.T., Ebner, B.C., Lintermans, M., Thiem, J.D., and Clear, R.C. (2013) Jailbreak: a fishway releases the endangered Macquarie perch from confinement below an anthropogenic barrier. Marine and Freshwater Research, 64 (9). pp. 900-908.
Cooke, Steven J., Midwood, Jonathan D., Thiem, Jason D., Klimley, Peter, Lucas, Martin C., Thorstad, Eva B., Eiler, John, Holbrook, Chris, and Ebner, Brendan C. (2013) Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry, 1 (May). pp. 1-19.
Ebner, B.C., and Morgan, D.L. (2013) Using remote underwater video to estimate freshwater fish species richness. Journal of Fish Biology, 82 (5). pp. 1592-1612.
Pearson, R.G., Godfrey, P.C., Arthington, A.H., Wallace, J., Karim, F., and Ellison, M. (2013) Biophysical status of remnant freshwater floodplain lagoons in the Great Barrier Reef catchment: a challenge for assessment and monitoring. Marine and Freshwater Research, 64 (3). pp. 208-222.
Myers, Trina, and Atkinson, Ian (2013) Eco-informatics modelling via semantic inference. Information Systems, 38 (1). pp. 16-32.
Donaldson, James A., Ebner, Brendan C., and Fulton, Christopher J. (2013) Flow velocity underpins microhabitat selection by gobies of the Australian Wet Tropics. Freshwater Biology, 58 (5). pp. 1038-1051.
Blanchette, M.L., and Pearson, R.G. (2013) Dynamics of habitats and macroinvertebrate assemblages in rivers of the Australian dry tropics. Freshwater Biology, 58 (4). pp. 742-757.
O'Grady, Damien, Leblanc, Marc, and Gillieson, David (2013) Relationship of local incidence angle with satellite radar backscatter for different surface conditions. International Journal of Applied Earth Observation and Geoinformation, 24. pp. 42-53.
Ban, S.S., Graham, N.A.J., and Connolly, S.R. (2013) Relationships between temperature, bleaching and white syndrome on the Great Barrier Reef. Coral Reefs, 32 (1). pp. 1-12.
Fulton, Christopher J., Starrs, Danswell, Ruibal, Monica P., and Ebner, Brendan C. (2012) Counting crayfish: active searching and baited cameras trump conventional hoop netting in detecting Euastacus armatus. Endangered Species Research, 19 (1). pp. 39-45.
Broadhurst, Ben T., Lintermans, Mark, Thiem, Jason D., Ebner, Brendan C., Wright, Daniel W., and Clear, Rhian C. (2012) Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoir. Aquatic Ecology, 46 (3). pp. 297-309.
Pert, Petina L., Butler, James R.A., Bruce, Caroline, and Metcalfe, Daniel (2012) A composite threat indicator approach to monitor vegetation condition in the Wet Tropics, Queensland, Australia. Ecological Indicators, 18. pp. 191-199.
Mustika, Putu Liza Kusuma, Birtles, Alastair, Welters, Riccardo, and Marsh, Helene (2012) The economic influence of community-based dolphin watching on a local economy in a developing country: implications for conservation. Ecological Economics, 79. pp. 11-20.
O'Brien, Dominique, Komarova, Tatiana, and Mueller, Jochen F. (2012) Determination of deployment specific chemical uptake rates for SPMD and PDMS using a passive flow monitor. Marine Pollution Bulletin, 64 (5). pp. 1005-1011.
Cinner, Joshua E., McClanahan, Tim R., MacNeil, M. Aaron, Graham, Nicholas A.J., Daw, Tim M., Mukminin, Ahmad, Feary, David A., Rabearisoa, Ando L., Wamukota, Andrew, Jiddawi, Narriman, Campbell, Stuart J., Baird, Andrew H., Januchowski-Hartley, Fraser A., Hamed, Salum, Lahari, Rachael, Morove, Tau, and Kuange, John (2012) Comanagement of coral reef social-ecological systems. Proceedings of the National Academy of Sciences of the United States of America, 109 (14). pp. 5219-5222.
Wamukota, A.W., Cinner, J.E., and McClanahan, T.R. (2012) Co-management of coral reef fisheries: a critical evaluation of the literature. Marine Policy, 36 (2). pp. 481-488.
Ban, Natalie C., Cinner, Joshua E., Adams, Vanessa M., Mills, Morena, Almany, Glenn R., Ban, Stephen S., McCook, Laurence J., and White, Alan (2012) Recasting shortfalls of marine protected areas as opportunities through adaptive management. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 262-271.
Madin, Elizabeth, Ban, Natalie C., Doubleday, Zoë A., Holmes, Thomas H., Pecl, Gretta T., and Smith, Franz (2012) Socio-economic and management implications of range-shifting species in marine systems. Global Environmental Change, 22 (1). pp. 137-146.
Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Brown, Katrina, Stead, Selina M., Graham, Nicholas A.J., and Maina, Jospeh (2012) To fish or not to fish: factors at multiple scales affecting artisanal fishers' readiness to exit a declining fishery. PLoS ONE, 7 (2). pp. 1-10.
Cinner, J.E., McClanahan, T.R., Graham, N.A.J., Daw, T.M., Maina, J., Stead, S.M., Wamukota, A., Brown, K., and Bodin, Ö. (2012) Vulnerability of coastal communities to key impacts of climate change on coral reef fisheries. Global Environmental Change, 22 (1). pp. 12-20.
Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.
Cinner, J.E., Basurto, Xavier, Fidelman, Pedro, Kuange, John, Lahari, Rachael, and Mukminin, Ahmad (2012) Institutional designs of customary fisheries management arrangements in Indonesia, Papua New Guinea, and Mexico. Marine Policy, 36 (1). pp. 278-285.
Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.
Jupiter, S.D., Weeks, R., Jenkins, A.P., Egli, D.P., and Cakacaka, A. (2012) Effects of a single intensive harvest event on fish populations inside a customary marine closure. Coral Reefs, 31 (2). pp. 321-334.
Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.
Knip, D.M., Heupel, M.R., and Simpfendorfer, C.A. (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784.
Woolsey, Erika, Bainbridge, Scott J., Kingsford, Michael J., and Byrne, Maria (2012) Impacts of cyclone Hamish at One Tree Reef: integrating environmental and benthic habitat data. Marine Biology, 159 (4). pp. 793-803.
Povinec, P.P., Burnett, W.C., Beck, A., Bokuniewicz, H., Charette, M., Gonneea, M.E., Groening, M., Ishitobi, T., Kontar, E., Kwong, L. Liong Wee, Marie, D.E.P., Moore, W.S., Oberdorfer, J.A., Peterson, R., Ramessur, R., Rapaglia, J., Stieglitz, T., and Top, Z. (2012) Isotopic, geophysical and biogeochemical investigation of submarine groundwater discharge: IAEA-UNESCO intercomparison exercise at Mauritius Island. Journal of Environmental Radioactivity, 104. pp. 24-45.
Kennedy, Karen, Schroeder, Thomas, Shaw, Melanie, Haynes, David, Lewis, Stephen, Bentley, Christie, Paxman, Chris, Carter, Steve, Brando, Vittorio E., Bartkow, Michael, Hearn, Laurence, and Mueller, Jochen F. (2012) Long term monitoring of photosystem II herbicides: correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 292-305.
Blanchette, Melanie L., and Pearson, Richard G. (2012) Macroinvertebrate assemblages in rivers of the Australian dry tropics are highly variable. Freshwater science, 31 (3). pp. 865-881.
Waterhouse, J., Brodie, J., Lewis, S., and Mitchell, A. (2012) Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65 (4-9). pp. 394-406.
Kroon, Frederieke J., Kuhnert, Petra M., Henderson, Brent L., Wilkinson, Scott N., Kinsey-Henderson, Anne, Abbot, Brett, Brodie, Jon E., and Turner, Ryan D.R. (2012) River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9). pp. 167-181.
Wilson, Barbara A., Valentine, Leonie E., Reaveley, Alice, Isaac, Joanne, and Wolfe, Kristen M. (2012) Terrestrial mammals of the Gnangara Groundwater System, Western Australia: history, status, and the possible impacts of a drying climate. Australian Mammalogy, 34 (2). pp. 202-216.
Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.
Young, Jock W., McKinnon, A. David, Ceccarelli, Daniela, Brinkman, Richard, Bustamante, Rodrigo H., Cappo, Mike, Dichmont, Cathy, Doherty, Peter, Furnas, Miles, Gledhill, Daniel, Griffiths, Shane, Hutton, Trevor, Ridgway, Ken, Smith, David, Skewes, Tim, Williams, Alan, and Richardson, Anthony J. (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834.
Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.
Ainsworth, T.D., Wasmund, K., Ukani, L., Seneca, F., Yellowlees, D., Miller, D., and Leggat, W. (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9.
Puga-Bernabéu, Angel, Webster, Jody M., Beaman, Robin J., and Guilbaud, Vincent (2011) Morphology and controls on the evolution of a mixed carbonate-siliciclastic submarine canyon system, Great Barrier Reef margin, north-eastern Australia. Marine Geology, 289 (1-4). pp. 100-116.
Foden, Jo, Devlin, Michelle J., Mills, David K., and Malcolm, Stephen J. (2011) Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and Wales. Biogeochemistry, 106 (2). pp. 157-175.
Leggat, William, Seneca, Francois, Wasmund, Kenneth, Ukani, Lubna, Yellowlees, David, and Ainsworth, Tracy D. (2011) Differential responses of the coral host and their algal symbiont to thermal stress. PLoS ONE, 6 (10). pp. 1-11.
Foale, Simon, Cohen, Philippa, Januchowski-Hartley, Stephanie, Wenger, Amelia, and Macintyre, Martha (2011) Tenure and taboos: origins and implications for fisheries in the Pacific. Fish and Fisheries, 12 (4). pp. 357-369.
McClanahan, Tim R., Graham, Nicholas A.J., MacNeil, M. Aaron, Muthiga, Nyawira A., Cinner, Joshua E., Bruggemann, J. Henrich, and Wilson, Shaun K. (2011) Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries. Proceedings of the National Academy of Sciences of the United States of America, 108 (41). pp. 17230-17233.
Abbey, Elizabeth, Webster, Jody M., and Beaman, Robin J. (2011) Geomorphology of submerged reefs on the shelf edge of the Great Barrier Reef: the influence of oscillating Pleistocene sea-levels. Marine Geology, 288 (1-4). pp. 61-78.
Leggat, William, Yellowlees, David, and Medina, Monica (2011) Recent progress in Symbiodinium transcriptomics. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 120-125.
Kool, Johnathan T., Paris, Claire B., Barber, Paul H., and Cowen, Robert K. (2011) Connectivity and the development of population genetic structure in Indo-West Pacific coral reef communities. Global Ecology and Biogeography, 20 (5). pp. 695-706.
Ban, Natalie, Adams, Vanessa, Almany, Glenn, Ban, Stephen, Cinner, Joshua, McCook, Laurence, Mills, Morena, Pressey, Bob, and White, Alan (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31.
Ban, Natalie C., Adams, Vanessa, Pressey, Robert L., and Hicks, John (2011) Promise and problems for estimating management costs of marine protected areas. Conservation Letters, 4 (3). pp. 241-252.
Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.
Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.
Hansen, Gretchen J.A., Ban, Natalie C., Jones, Michael L., Kaufman, Les, Panes, Hazel M., Yasué, Maï, and Vincent, Amanda C.J. (2011) Hindsight in marine protected area selection: a comparison of ecological representation arising from opportunistic and systematic approaches. Biological Conservation, 144 (6). pp. 1866-1875.
Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.
Simpfendorfer, C.A., Heupel, M.R., White, W.T., and Dulvy, N.K. (2011) The importance of research and public opinion to conservation management of sharks and rays: a synthesis. Marine and Freshwater Research, 62 (6). pp. 518-527.
O'Brien, Dominique, Bartkow, Michael, and Mueller, Jochen F. (2011) Determination of deployment specific chemical uptake rates for SDB-RPD Empore disk using a passive flow monitor (PFM). Chemosphere, 83 (9). pp. 1290-1295.
O'Brien, Dominique, Hawker, Darryl, Shaw, Melanie, and Mueller, Jochen F. (2011) The performance of passive flow monitors and phosphate accumulating passive samplers when exposed to pulses in external water flow rate and/or external phosphate concentrations. Environmental Pollution, 159 (5). pp. 1435-1441.
Kininmonth, Stuart, Beger, Maria, Bode, Michael, Peterson, Eric, Adams, Vanessa M., Dorfman, Dan, Brumbaugh, Daniel R., and Possingham, Hugh P. (2011) Dispersal connectivity and reserve selection for marine conservation. Ecological Modelling, 222 (7). pp. 1272-1282.
Feary, David A., Cinner, Joshua E., Graham, Nicholas A.J., and Januchowski-Hartley, Fraser A. (2011) Effects of customary marine closures on fish behavior, spear-fishing success, and underwater visual surveys. Conservation Biology, 25 (2). pp. 341-349.
Mora, Camilo, Aburto-Oropeza, Octavio, Ayala Bocos, Arturo, Ayotte, Paula M., Banks, Stuart, Bauman, Andrew G., Beger, Maria, Bessudo, Sandra, Booth, David J., Brokovich, Eran, Brooks, Andrew, Chabanet, Pascal, Cinner, Joshua E., Cortés, Jorge, Cruz-Motta, Juan J., Cupul Magaña, Amilcar, DeMartini, Eward E., Edgar, Graham J., Feary, David A., Ferse, Sebastian C.A., Friedlander, Alan M., Gaston, Kevin J., Gough, Charlotte, Graham, Nicholas A.J., Green, Alison, Guzman, Hector, Hardt, Marah, Kulbicki, Michel, Letourneur, Yves, López Pérez, Andres, Loreau, Michel, Loya, Yossi, Martinez, Camilo, Mascareñas-Osorio, Ismael, Morove, Tau, Nadon, Marc-Olivier, Nakamura, Yohei, Paredes, Gustavo, Polunin, Nicholas V.C., Pratchett, Morgan S., Reyes Bonilla, Héctor, Rivera, Fernando, Sala, Enric, Sandin, Stuart A., Soler, German, Stuart-Smith, Rick, Tessier, Emmanuel, Tittensor, Derek P., Tupper, Mark, Usseglio, Paolo, Vigliola, Laurent, Wantiez, Laurent, Williams, Ivor, Wilson, Shaun K., and Zapata, Fernando A. (2011) Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biology, 9 (4). pp. 1-9.
Cole, A.J., Lawton, R.J., Pratchett, M.S., and Wilson, S.K. (2011) Chronic coral consumption by butterflyfishes. Coral Reefs, 30 (1). pp. 85-93.
Penin, Lucie, Michonneau, François, Carroll, Andrew, and Adjeroud, Mehdi (2011) Effects of predators and grazers exclusion on early post-settlement coral mortality. Hydrobiologia, 663 (1). pp. 259-264.
Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425. pp. 233-246.
Daw, Tim M., Robinson, Jan, and Graham, Nicholas A.J. (2011) Perceptions of trends in Seychelles artisanal trap ﬁsheries: comparing catch monitoring, underwater visual census and ﬁshers' knowledge. Environmental Conservation, 38 (1). pp. 75-88.
Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.
Stoeckl, Natalie, Hicks, Christina C., Mills, Morena, Fabricius, Katharina, Esparon, Michelle, Kroon, Frederieke, Kaur, Kamaljit, and Costanza, Robert (2011) The economic value of ecosystem services in the Great Barrier Reef: our state of knowledge. Annals of the New York Academy of Sciences, 1219. pp. 113-133.
Cole, A.J., and Pratchett, M.S. (2011) Inter-specific variation in susceptibility to grazing among common reef corals. Marine Ecology Progress Series, 422. pp. 155-164.
Graham, N.A.J., Nash, K.L., and Kool, J.T. (2011) Coral reef recovery dynamics in a changing world. Coral Reefs, 30 (2). pp. 283-294.
Perry, Chris T., and Smithers, Scott G. (2011) Cycles of coral reef 'turn-on', rapid growth and 'turn-off' over the past 8500 years: a context for understanding modern ecological states and trajectories. Global Change Biology, 17 (1). pp. 76-86.
Burt, John A., Feary, David A., Bauman, Andrew G., Usseglio, Paolo, Cavalcante, Georgenes H., and Sale, Peter F. (2011) Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. ICES Journal of Marine Science, 68 (9). pp. 1875-1883.
McClanahan, T.R., and Hicks, C.C. (2011) Changes in life history and ecological characteristics of coral reef fish catch composition with increasing fishery management. Fisheries Management and Ecology, 18 (1). pp. 50-60.
Steneck, R.S., Hughes, T.P., Cinner, J.E., Adger, W.N., Arnold, S.N., Berkes, F., Boudreau, S.A., Brown, K., Folke, C., Gunderson, L., Olsson, P., Scheffer, M., Stephenson, E., Walker, B., Wilson, J., and Worm, B. (2011) Creation of a gilded trap by the high economic value of the Maine lobster fishery. Conservation Biology, 25 (5). pp. 904-912.
Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Graham, Nicholas A.J., and Wilson, Shaun K. (2011) Design factors and socioeconomic variables associated with ecological responses to fishery closures in the Western Indian Ocean. Coastal Management, 39 (4). pp. 412-424.
Tan, C.H., and Heron, S.F (2011) First observed severe mass bleaching in Malaysia, Greater Coral Triangle. Galaxea, Journal of Coral Reef Studies, 13 (1). pp. 27-28.
Graham, Nicholas A.J., Ainsworth, Tracy D., Baird, Andrew H., Ban, Natalie C., Bay, Line K., Cinner, Joshua E., De Freitas, Debora M., Diaz-Pulido, Guillermo, Dornelas, Maria, Dunn, Simon R., Fidelman, Pedro I.J., Foret, Sylvain, Good, Tatjana C., Kool, Johnathan, Mallela, Jennie, Penin, Lucie, Pratchett, Morgan S., and Williamson, David H. (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136.
Wallace, Bryan P., DiMatteo, Andrew D., Bolten, Alan B., Chaloupka, Milani Y., Hutchinson, Brian J., Abreu-Grobois, F. Alberto, Mortimer, Jeanne A., Seminoff, Jeffery A., Amorocho, Diego, Bjorndal, Karen A., Bourjea, Jérôme, Bowen, Brian W., Dueñas, Raquel Briseño, Casale, Paolo, Choudhury, B.C., Costa, Alice, Dutton, Peter H., Fallabrino, Alejandro, Finkbeiner, Elena M., Girard, Alexandre, Girondot, Marc, Hamann, Mark, Hurley, Brendan J., López-Mendilaharsu, Milagros, Marcovaldi, Maria Angela, Musick, John A., Nel, Ronel, Pilcher, Nicolas J., Troëng, Sebastian, Witherington, Blair, and Mast, Roderic B. (2011) Global conservation priorities for marine turtles. PLoS ONE, 6 (9). pp. 1-14.
Hoey, Andrew, Pratchett, Morgan, and Cvitanovic, Christopher (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. PLoS ONE, 6 (10). e25824.
Bongaerts, P., Bridge, T.C.L., Kline, D.I., Muir, P.R., Wallace, C.C., Beaman, R.J., and Hoegh-Guldberg, O. (2011) Mesophotic coral ecosystems on the walls of Coral Sea atolls. Coral Reefs, 30 (2). p. 335.
O'Brien, Dominique S., Booij, Kees, Hawker, Darryl W., and Mueller, Jochen F. (2011) Method for the in situ calibration of a passive phosphate sampler in estuarine and marine waters. Environmental Science and Technology, 45 (7). pp. 2871-2877.
Cinner, J.E. (2011) Social-ecological traps in reef ﬁsheries. Global Environmental Change, 21 (3). pp. 835-839.
Bene, C, Evans, Louisa, Mills, David, Ovie, S, Raji, A, Tafida, A, Kodio, A, Sinaba, F, Morand, F, Lemoalle, Jacques, and Andrew, N (2011) Testing resilience thinking in a poverty context: experience from the Niger River basin. Global Environmental Change, 21 (4). pp. 1173-1184.
Negri, Andrew P., and Hoogenboom, Mia O. (2011) Water contamination reduces the tolerance of coral larvae to thermal stress. PLoS ONE, 6 (5). pp. 19703-19712.
Cinner, Joshua E., and David, Gilbert (2011) The human dimensions of coastal and marine ecosystems in the Western Indian Ocean. Coastal Management, 39 (4). pp. 351-357.
Werry, J.M., Lee, S.Y., Otway, N.M., Hu, Y., and Sumpton, W. (2011) A multi-faceted approach for quantifying the estuarine–nearshore transition in the life cycle of the bull shark, Carcharhinus leucas. Marine and Freshwater Research, 62 (12). pp. 1421-1431.
Gates, Ruth D., and Ainsworth, Tracy D. (2011) The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 94-101.
Wallace, Bryan P., DiMatteo, Andrew D., Hurley, Brendan J., Finkbeiner, Elena M., Bolten, Alan B., Chaloupka, Milani Y., Hutchinson, Brian J., Abreu-Grobois, F. Alberto, Amorocho, Diego, Bjorndal, Karen A., Bourjea, Jerome, Bowen, Brian W., Dueñas, Raquel Briseño, Casale, Paolo, Choudhury, B.C., Costa, Alice, Dutton, Peter H., Fallabrino, Alejandro, Girard, Alexandre, Girondot, Marc, Godfrey, Matthew H., Hamann, Mark, López- Mendilaharsu, Milagros, Marcovaldi, Maria Angela, Mortimer, Jeanne A., Musick, John A., Nel, Ronel, Pilcher, Nicolas J., Seminoff, Jeffery A., Troëng, Sebastian, Witherington, Blair, and Mast, Roderic B. (2010) Regional management units for marine turtles: a novel framework for prioritizing conservation and research across multiple scales. PLoS ONE, 5 (12). pp. 1-11.
Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.
Smajgl, A, Larson, S., Hug, B., and Martins De Freitas, D.M. (2010) Water use benefit index as a tool for community-based monitoring of water related trends in the Great Barrier Reef region. Journal of Hydrology, 395 (1-2). pp. 1-9.
Moore, Ben D., Lawler, Ivan r., Wallis, Ian R., Beale, Colin M., and Foley, William J. (2010) Palatability mapping: a koala’s eye view of spatial variation in habitat quality. Ecology, 91 (11). pp. 3165-3176.
Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.
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Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.
Waterhouse, Jane, and Devlin, Michelle (2011) Managing Water Quality on the Great Barrier Reef: an overview of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns.
Waterhouse, Jane, Brodie, Jon, UNSPECIFIED, and UNSPECIFIED (2011) Identification of Priority Pollutants and Priority Areas in the Great Barrier Reef catchments. Report. Reef and Rainforest Research Centre, Cairns, QLD.
Johnson, Johanna, Brando, Vittorio, Devlin, Michelle, McKenzie, Len, Morris, Sheridan, Schaffelke, Britta, Thompson, Angus, Waterhouse, Jane, and Waycott, M (2011) Reef Rescue Marine Monitoring Program: 2009/2010 synthesis report. Report. Reef and Rainforest Research Centre, Cairns, QLD.
Grech, Alana, and Marsh, Helene (2010) Community Engagement Tools for Sea Country Planning: Technical Manual. Manual. School of Earth and Environmental Sciences, Townsville, QLD, Australia.
Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Foale, Simon (2009) A Review of Ecosystem Approach to Fisheries within The Nature Conservancy’s Community Engagement Processes in Melanesia. Report. The Nature Conservancy, Online.
Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Little, L. Rich, Begg, Gavin A., Goldman, Barry, Ellis, Nick, Mapstone, Bruce D., Punt, André E., Jones, Annabel, Sutton, Steve, and Williams, Ashley (2008) Modelling Multi-Species Targeting of Fishing Effort in the Queensland Coral Reef Fin Fish Fishery. Report. James Cook University Fishing & Fisheries Research Centre, Townsville, QLD, Australia.
Foale, Simon (2007) Social and economic context of marine resource depletion in Gagil and Maap, Yap State, FSM. Report. Secretariat of the Pacific Regional Environment Programme, Samoa.
Stieglitz, Thomas (2014) Groundwater-ocean interaction and its effects on coastal ecological processes: are there groundwater-dependant ecosystems in the coastal zone? In: Abstracts from Goldschmidt 2014, p. 2385. From: Goldschmidt 2014 Conference, 8-13 June 2014 , Sacramento, CA, USA.
Wia, Jane, Januchowski-Hartley, Fraser, Lahari, Rachael U., Morove, Tau, Perks, Helen M., and Holmes, Katherine E. (2012) Coral farming as means of sustaining livelihoods and promoting resource management. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
Myers, Trina, Trevathan, Jarrod, Johnstone, Ron, and UNSPECIFIED (2012) Supporting dynamic hypothesis modelling and alerts in marine environments. In: Coast to Coast 2012: living on the edge: program and abstract book, p. 81. From: Coast to Coast 2012: Living on the Edge, 17-21 September 2012, Brisbane, QLD, Australia.
Heupel, Michelle R., and Webber, Dale M. (2012) Trends in acoustic tracking: where are the fish going and how will we follow them? In: American Fisheries Society Symposium (76), pp. 219-231. From: American Fisheries Society Symposium 76: advances in fish tagging and marketing technology, 24-28 February 2008, Auckland, NZL.
Sun, Guangzhi, and Heimann, Kirsten (2012) The concept of ecosystem manipulation: what is it, and how does it work in bioremediation? In: Proceedings of the 6th International Conference on Environmental Science and Technology (1), pp. 558-563. From: ICEST2012: 6th International Conference on Environmental Science and Technology, 25-29 June 2012, Houston, TX, USA.
Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation, pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.
Adams, Vanessa M., and Pressey, Robert L. (2011) An info‐gap model to examine the robustness of cost‐efficient budget allocations. In: Vulnerability, Uncertainty, and Risk: analysis, modeling, and management. Proceedings of the ICVRAM 2011 and ISUMA 2011 Conferences, pp. 1-8. From: ICVRAM-ISUMA 2011 International Conference on Vulnerability and Risk Analysis and Management and International Symposium on Uncertainty Modeling and Analysis, 11-13 April 2011, Hyattsville, MD, USA.
Myers, Trina, Atkinson, Ian, and Johnstone, Ron (2010) Tools for the rationalisation and management of data collection – the Semantic Reef. In: Coast to Coast 2010: actions for change: program and abstract handbook, p. 31. From: Coast to Coast 2010: actions for change, 20-24 September 2010, Adelaide, SA, Australia.
Myers, Trina, Atkinson, Ian, and Johnstone, Ron (2010) Semantically enabling the SEMAT Project: extending marine sensor networks for decision support and hypothesis testing. In: Proceedings of 2010 International Conference on Complex, Intelligent and Software Intensive Systems, pp. 974-979. From: 3rd IEEE International Workshop on Ontology Alignment and Visualization (OnAV'10), 15-18 February 2010, Krakow, Poland.
Ban, Natalie, Royle, Krista, Short, Charlie, Davis, Neil, Bodtker, Karin, Bryan, Tanya, Cripps, Ken, Day, Andrew, Haggarty, Dana, Lee, Lynn, Manson, Murray, Nicolson, Dave, Rasmussen, Glen, and Ladell, Kate Willis (2010) Identifying priority areas for marine conservation in British Columbia: a collaborative approach. In: Proceedings of the Sixth International Conference of Science and the Management of Protected Areas, pp. 251-262. From: Sixth International Conference of Science and the Management of Protected Areas, 21-26 May 2007, Wolfville, Nova Scotia, Canada.
Huveneers, C., Harcourt, R., Boomer, A., Hobday, A., Pederson, H., Semens, J., Stieglitz, T., Vallee, R., Webber, D., Heupel, M., Simpfendorfer, C., and Peddemors, V. (2009) The influence of environmental parameters (meteorological and oceanographic) on the performance of acoustic receivers. In: Papers from 2nd AATAMS Workshop. From: 2nd AATAMS Workshop, 2-4 November 2009, Mosman, NSW, Australia.
Ban, Natalie (2008) Siting marine reserves: stakeholder-based versus science-driven approaches. In: Proceedings of the Fourth World Fisheries Congress, pp. 1267-1275. From: Fourth World Fisheries Congress, 2-6 May, 2004, Vancouver, British Columbia, Canada.
Myers, Trina S., and Atkinson, Ian M. (2008) The semantic reef: a hypothesis-based, eco-informatics platform to support automated knowledge discovery for remotely monitored reef systems. In: Proceedings of the 11th International Coral Reef Symposium (1), pp. 531-535. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, Florida, USA.
Muehlig-Hofmann, Annette, Veitayaki, Joeli, Polunin, Nicholas V.C., Stead, Selina, and Graham, Nicholas (2006) Community-based marine resource management in Fiji – from yesterday to tomorrow. In: Proceedings of the 10th International Coral Reef Symposium 2004 (1), pp. 1259-1266. From: 10th International Coral Reef Symposium 2004, 28 June - 2 July 2004, Okinawa, Japan.
Zeppel, Heather, and Carmody, Julie (2004) Managing environmental tourism in Douglas Shire, North Queensland. In: Proceedings of ASBBS 7th International Conference, pp. 499-511. From: ASBBS 7th International Conference, 6 - 7 August 2004, Cairns, QLD, Australia.
Marsh, Helene, O'Shea, Thomas J., and Reynolds, John E. (2011) Ecology and Conservation of the Sirenia: dugongs and manatees. Conservation Biology, 18 . Cambridge University Press, Cambridge, UK.
Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M. (2009) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, the Netherlands.
Mazda, Yoshihiro, Wolanski, Eric, and Ridd, Peter (2007) The Role of Physical Processes in Mangrove Environments: manual for the preservation and utilization of mangrove ecosystems. Terrapub, Tokyo, Japan.
Habashiani, Rasoul (2011) Qanat: a sustainable groundwater supply system. Masters (Research) thesis, James Cook University.
Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.
Puill-Stephan, Eneour (2010) Chimerism and allorecognition in the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.
Gardiner, Naomi Marcelle (2010) Habitat specialisation, niche overlap and site fidelity in a vulnerable family of coral reef fishes – the cardinalfish (Apogonidae). PhD thesis, James Cook University.
Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.
Cappo, Mike (2010) Development of a baited video technique and spatial models to explain patterns of fish biodiversity in inter-reef waters. PhD thesis, James Cook University.
Fuentes, Mariana Menezes Prata Bezerra (2010) Vulnerability of sea turtles to climate change: a case study within the northern Great Barrier Reef green turtle population. PhD thesis, James Cook University.
Martins De Freitas, Debora (2010) The role of public participation, spatial information and GIS in natural resource management of the dry tropical coast, northern Australia. PhD thesis, James Cook University.
Richards, Zoe Trisha (2009) Rarity in the coral genus Acropora: implications for biodiversity conservation. PhD thesis, James Cook University.
Myers, Trina Sharlene (2009) Applying semantic technologies and artificial intelligence to eco-informatic modelling of coral reef systems. PhD thesis, James Cook University.
Williamson, David (2009) Fishery effects and benefits of marine protected areas within the Great Barrier Reef Marine Park. PhD thesis, James Cook University.
Cooper, Timothy F. (2008) Coral bioindicators of environmental conditions on coastal coral reefs. PhD thesis, James Cook University.
Dinsdale, Elizabeth (2004) Coral reef health indicators: integrating ecological and perceptual assessments of anchor damage. PhD thesis, James Cook University.
Green, Bridget Siobhan (2004) Parental and environmental effects on the early life history of a tropical reef fish, Amphiprion melanopus. PhD thesis, James Cook University.
Birrell, Chico Liam (2003) Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Masters (Research) thesis, James Cook University.