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White, J., Simpfendorfer, C.A., Tobin, A.J., and Heupel, M.R. (2014) Age and growth parameters of shark-like batoids. Journal of Fish Biology, 84 (5). pp. 1340-1353.

Johansen, J.L., Messmer, V., Coker, D.J., Hoey, A.S., and Pratchett, M.S. (2014) Increasing ocean temperatures reduce activity patterns of a large commercially important coral reef fish. Global Change Biology, 20 (4). pp. 1067-1074.

Robinson, Jan, Cinner, Joshua E., and Graham, Nicholas A.J. (2014) The influence of fisher knowledge on the susceptibility of reef fish aggregations to fishing. PLoS ONE, 9 (3). e91296. pp. 1-14.

Wakefield, Corey B., Williams, Ashley, Newman, Steve J., Bunel, Melanie, Dowling, Christopher E., Armstrong, Chella A., and Langlois, Tim J. (2014) Rapid and reliable multivariate discrimination for two cryptic Eteline snappers using otolith morphometry. Fisheries Research , 151. pp. 100-106.

Carlson, J.K., Gulak, S.J.B., Simpfendorfer, C.A., Grubbs, R.D., Romine, J.G., and Burgess, G.H. (2014) Movement patterns and habitat use of smalltooth sawfish, Pristis pectinata, determined using pop-up satellite archival tags. Aquatic Conservation: marine and freshwater ecosystems , 24 (1). pp. 104-117.

Vandamme, S.G., Maes, G.E., Raeymaekers, J.A.M., Cottenie, K., Imsland, A.K., Hellemans, B., Lacroix, G., Mac Aoidh, E., Martinsohn, J.T., Martínez, P., Robbens, J., Vilas, R., and Volckaert, F.A.M. (2014) Regional environmental pressure influences population differentiation in turbot (Scophthalmus maximus). Molecular Ecology, 23 (3). pp. 618-636.

Frisch, Ashley J., Ireland, Matthew, and Baker, Ronald (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology, 161 (1). pp. 61-73.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Cooke , Steven J., Messmer, Vanessa, Tobin, Andrew J., Pratchett, Morgan S., and Clark, Timothy D. (2014) Refuge-seeking impairments mirror metabolic recovery following fisheries-related stressors in the Spanish flag snapper (Lutjanus carponotatus) on the Great Barrier Reef. Physiological and Biochemical Zoology, 87 (1). pp. 136-147.

Geraghty, Pascal T., Macbeth, William G., Harry, Alastair V., Bell, Jacqueline E., Yerman, Michelle N., and Williamson, Jane E. (2014) Age and growth parameters for three heavily exploited shark species off temperate eastern Australia. ICES Journal of Marine Science, 71 (3). pp. 559-573.

Moore, Brad R., and Simpfendorfer, Colin A. (2014) Assessing connectivity of a tropical estuarine teleost through otolith elemental profiles. Marine Ecology Progress Series, 501. pp. 225-238.

Pujolar, J.M., Jacobsen, M.W., Als, T.D., Frydenberg, J., Magnussen, E., Jónsson, B., Jiang, X., Cheng, L., Bekkevold, D., Maes, G.E., Bernatchez, L., and Hansen, M.M. (2014) Assessing patterns of hybridization between North Atlantic eels using diagnostic single-nucleotide polymorphisms. Heredity, 112. pp. 627-637.

Grüss, Arnaud, Robinson, Jan, Heppell, Selina S., Heppell, Scott A., and Semmens, Brice X. (2014) Conservation and fisheries effects of spawning aggregation marine protected areas: what we know, where we should go, and what we need to get there. ICES Journal of Marine Science, 71 (7). pp. 1515-1534.

Munroe, S.E.M., Simpfendorfer, Colin, and Heupel, M.R. (2014) Defining shark ecological specialisation: concepts, context, and examples. Reviews in Fish Biology and Fisheries, 24 (1). pp. 317-331.

McLean, Montana F., Simpfendorfer, Colin A., Heupel, Michelle R., Dadswell, Michael J., and Stokesbury, Michael J.W. (2014) Diversity of behavioural patterns displayed by a summer feeding aggregation of Atlantic sturgeon in the intertidal region of Minas Basin, Bay of Fundy, Canada. Marine Ecology Progress Series, 496. pp. 59-69.

Waltrick, Daniela, Jones, Susan M., Simpfendorfer, Colin A., and Awruch, Cynthia A. (2014) Endocrine control of embryonic diapause in the Australian sharpnose shark Rhizoprionodon taylori. PLoS One, 9 (7). e101234. pp. 1-10.

Grüss, Arnaud, Kaplan, David M., and Robinson, Jan (2014) Evaluation of the effectiveness of marine reserves for transient spawning aggregations in data-limited situations. ICES Journal of Marine Science, 71 (3). pp. 435-449.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2014) Habitat and space use of an abundant nearshore shark, Rhizoprionodon taylori. Marine and Freshwater Research, 65 (11). pp. 959-968.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2014) Sedentary or mobile? Variability in space and depth use of an exploited coral reef fish. Marine Biology, 161 (9). pp. 2155-2166.

Whitty, Jeff M., Phillips, Nicole M., Thorburn, Dean C., Simpfendorfer, Colin A., Field, Iain, Peverell, Stirling C., and Morgan, David L. (2014) Utility of rostra in the identification of Australian sawfishes (Chondrichthyes: Pristidae). Aquatic Conservation: marine and freshwater ecosystems , 24 (6). pp. 791-804.

Currey, L.M., Heupel, M.R., Simpfendorfer, C.A., and Clark, T.D. (2013) Blood lactate loads of redthroat emperor Lethrinus miniatus associated with angling stress and exhaustive exercise. Journal of Fish Biology, 83 (5). pp. 1401-1406.

Miller, Terrence L., and Cribb, Thomas H. (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86 (2). pp. 101-112.

Nash, Kirsty L., Graham, Nicholas A.J., and Bellwood, David R. (2013) Fish foraging patterns, vulnerability to fishing, and implications for the management of ecosystem function across scale. Ecological Applications, 23 (7). pp. 1632-1644.

Taylor, B.M., and Mills, J.S. (2013) Movement and spawning migration patterns suggest small marine reserves can offer adequate protection for exploited emperorfishes. Coral Reefs, 32 (4). pp. 1077-1087.

Geraghty, Pascal T., Williamson, Jane E., Macbeth, William G., Wintner, Sabine P., Harry, Alastair V., Ovenden, Jennifer R., and Gillings, Michael R. (2013) Population expansion and genetic structure in Carcharhinus brevipinna in the southern Indo-Pacific. PLoS ONE, 8 (9). e75169. pp. 1-18.

Pujolar, J.M., Jacobsen, M.W., Frydenberg, J., Als, T.D., Larsen, P.F., Maes, G.E., Zane, L., Jian, J.B., Cheng, L., and Hansen, M.M. (2013) A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel. Molecular Ecology Resources, 13 (4). pp. 706-714.

Pujolar, J.M., Milan, M., Marino, I.A.M., Capoccioni, F., Ciccotti, E., Belpaire, C., Covaci, A., Malarvannan, G., Patarnello, T., Bargelloni, L., Zane, L., and Maes, G.E. (2013) Detecting genome-wide gene transcription profiles associated with high pollution burden in the critically endangered European eel. Aquatic Toxicology, 132-133. pp. 157-164.

Williams, A.J., Loeun, K., Nicol, S.J., Chavance, P., Ducrocq, M., Harley, S.J., Pilling, G.M., Allain, V., Mellin, C., and Bradshaw, C.J.A. (2013) Population biology and vulnerability to fishing of deep-water Eteline snappers. Journal of Applied Ichthyology, 29 (2). pp. 395-403.

Rhodes, K.L., Taylor, B.M., Wichilmel, C.B., Joseph, E., Hamilton, R.J., and Almany, G.R. (2013) Reproductive biology of squaretail coralgrouper Plectropomus areolatus using age-based techniques. Journal of Fish Biology, 82 (4). pp. 1333-1350.

Harry, Alastair V., Tobin, Andrew J., and Simpfendorfer, Colin A. (2013) Age, growth and reproductive biology of the spot-tail shark, Carcharhinus sorrah, and the Australian blacktip shark,C. tilstoni, from the Great Barrier Reef World Heritage Area, north-eastern Australia. Marine and Freshwater Research, 64 (4). pp. 277-293.

Currey, L.M., Williams, A.J., Mapstone, B.D., Davies, C.R., Carlos, G., Welch, D.J., Simpfendorfer, C.A., Ballagh, A.C., Penny, A.L., Grandecourt, E.M., Mapleston, A., Wiebkin, A.S., and Bean, K. (2013) Comparative biology of tropical Lethrinus species (Emperors): challenges for multi-species management. Journal of Fish Biology, 82 (3). pp. 764-788.

Diopere, Eveline, Hellemans, Bart, Volckaert, Filip A.M., and Maes, Gregory E. (2013) Identification and validation of single nucleotide polymorphisms in growth- and maturation-related candidate genes in sole (Solea solea L.). Marine Genomics, 9. pp. 33-38.

Maes, G.E., Raeymaekers, J.A.M., Hellemans, B., Geeraerts, C., Parmentier, K., De Temmerman, L., Volckaert, F.A.M., and Belpaire, C. (2013) Gene transcription reflects poor health status of resident European eel chronically exposed to environmental pollutants. Aquatic Toxicology, 126. pp. 242-255.

Smart, Jonathan J., Harry, Alastair V., Tobin, Andrew J., and Simpfendorfer, Colin A. (2013) Overcoming the constraints of low sample sizes to produce age and growth data for rare or threatened sharks. Aquatic Conservation, 23 (1). pp. 124-134.

White, J., Heupel, M.R., Simpfendorfer, C.A., and Tobin, A.J. (2013) Shark-like batoids in Pacific fisheries: prevalence and conservation concerns. Endangered Species Research, 19 (3). pp. 277-284.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Sutton, Stephen G., and Begg, Gavin A. (2013) The role of subsistence fishing in the hybrid economy of an indigenous community. Marine Policy, 37. pp. 183-191.

Olaganathan, Rajee, and Patterson, Jamila (2013) Effect of anthraquinone dyes on the carbohydrate, protein and lipid content in the muscle of Channa punctatus and Cyprinus carpio. International Journal of Pharmaceutical Applications, 4 (1). pp. 11-19.

Morgan, Jess A.T., Macbeth, Michael, Broderick, Damien, Whatmore, Paul, Street, Raewyn, Welch, David J., and Ovenden, Jennifer R. (2013) Hybridisation, paternal leakage and mitochondrial DNA linearization in three anomalous fish (Scombridae). Mitochondrion, 13 (6). pp. 852-861.

Tobin, Andrew, Currey, Leanne, and Simpfendorfer, Colin (2013) Informing the vulnerability of species to spawning aggregation fishing using commercial catch data. Fisheries Research, 143. pp. 47-56.

Chin, A., Heupel, M.R., Simpfendorfer, C.A., and Tobin, A.J. (2013) Ontogenetic movements of juvenile blacktip reef sharks: evidence of dispersal and connectivity between coastal habitats and coral reefs. Aquatic Conservation, 23 (3). pp. 468-474.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Begg, Gavin A., and Sutton, Stephen G. (2013) Quantifying changes in the subsistence reef fishery of indigenous communities in Torres Strait, Australia. Fisheries Research, 137. pp. 50-58.

Hanson, N.N., Wurster, C.M., and Todd, C.D. (2013) Reconstructing marine life-history strategies of wild Atlantic salmon from the stable isotope composition of otoliths. Marine Ecology Progress Series, 475. pp. 249-266.

Bijoux, Jude, Dagorn, Laurent, Cowley, Paul D., Simier, Monique, Adam, Pierre-André, and Robinson, Jan (2013) Spawning aggregation dynamics of brown-marbled grouper and camouflage grouper at a remote Indian Ocean atoll. Endangered Species Research, 22 (2). pp. 145-157.

Chin, Andrew, Simpfendorfer, Colin, Tobin, Andrew, and Heupel, Michelle (2013) Validated age, growth and reproductive biology of Carcharhinus melanopterus, a widely distributed and exploited reef shark. Marine and Freshwater Research, 64 (10). pp. 965-975.

Chang, Mei-Yu, Geffen, Audrey J., Kosler, Jan, Dundas, Siv Hjorth, FishPop Trace Consortium, , and Maes, Gregory E. (2012) The effect of ablation pattern on LA-ICPMS analysis of otolith element composition in hake, Merluccius merluccius. Environmental Biology of Fishes, 95 (4). pp. 509-520.

Heupel, Michelle R., Simpfendorfer, Colin A., Olsen, Esben M., and Moland, Even (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137.

Helyar, Sarah J., Limborg, Morten T., Bekkevold, Dorte, Babbucci, Massimiliano, van Houdt, Jeroen, Maes, Gregory E., Bargelloni, Luca, Nielsen, Rasmus O., Taylor, Martin I., Ogden, Rob, Cariani, Alessia, Carvalho, Gary R., Consortium, FishPopTrace, and Panitz, Frank (2012) SNP discovery using next generation transcriptomic sequencing in Atlantic herring (Clupea harengus). PLoS ONE, 7 (8). e42089. pp. 1-11.

Moore, Bradley R., Simpfendorfer, Colin A., Newman, Stephen J., Stapley, Jason M., Allsop, Quentin, Sellin, Michelle J., and Welch, David J. (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: king threadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224.

Chin, Andrew, Tobin, Andrew, Simpfendorfer, Colin, and Heupel, Michelle (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460. pp. 115-125.

Yates, Peter M., Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2012) Diversity in young shark habitats provides the potential for portfolio effects. Marine Ecology Progress Series, 458. pp. 269-281.

Olsen, Esben Moland, Heupel, Michelle R., Simpfendorfer, Colin A., and Moland, Even (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122. pp. 63-72.

Nielsen, Einar E., Cariani, Alessia, Aoidh, Eion Mac, Maes, Gregory E., Milano, Ilaria, Ogden, Rob, Taylor, Martin, Hemmer-Hansen, Jakob, Babbucci, Massimiliano, Bargelloni, Luca, Bekkevold, Dorte, Diopere, Eveline, Grenfell, Leonie, Helyar, Sarah, Limborg, Morten T., Martinsohn, Jann T., McEwing, Ross, Panitz, Frank, Patarnello, Tomaso, Tinti, Fausto, Van Houdt, Jeroen K.J., Volckaert, Filip A.M., Waples, Robin S., FishPop Trace Consortium, , and Carvalho, Gary R. (2012) Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Communications, 3 (5). 851. pp. 1-6.

Morgan, Jess A.T., Harry, Alastair V., Welch, David J., Street, Raewyn, White, Jimmy, Geraghty, Pascal T., Macbeth, William G., Tobin, Andrew, Simpfendorfer, Colin A., and Ovenden, Jennifer R. (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209.

Cuveliers, E.L., Larmuseau, M.H.D., Hellemans, B., Verherstraeten, S.L.N.A., Volckaert, F.A.M., and Maes, G.E. (2012) Multi-marker estimate of genetic connectivity of sole (Solea solea) in the North-East Atlantic Ocean. Marine Biology, 159 (6). pp. 1239-1253.

Lelievre, Stephanie, Jerome, Marc, Maes, Gregory E., Vaz, Sandrine, Calaivany, Sachidhanandam, and Verrez-Bagnis, Veronique (2012) Integrating molecular identification of pelagic eggs with geostatistical mapping to improve the delineation of North Sea fish spawning grounds. Marine Ecology Progress Series, 445. pp. 161-172.

Lédée, Elodie J.I., Sutton, Stephen G., Tobin, Renae C., and De Freitas, Debora M. (2012) Responses and adaptation strategies of commercial and charter fishers to zoning changes in the Great Barrier Reef Marine Park. Marine Policy, 36 (1). pp. 226-234.

Boukouvala, Evridiki, Cariani, Alessia, Maes, Gregory E., Sevilla, Rafael G., Verrez-Bagnis, Veronique, Jerome, Marc, Guarniero, Ilaria, Monios, Georgios, Tinti, Fausto, Volckaert, Filip A.M., Bautista, Jose M., and Krey, Grigorios (2012) Restriction fragment length analysis of the cytochrome b gene and muscle fatty acid composition differentiate the cryptic flatfish species Solea solea and Solea aegyptiaca. Journal of Agricultural and Food Chemistry, 60 (32). pp. 7941-7948.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Norton, Shelley L., Wiley, Tonya R., Carlson, John K., Frick, Amanda L., Poulakis, Gregg R., and Simpfendorfer, Colin A. (2012) Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries: dynamics, management, and ecosystem science, 4 (1). pp. 473-480.

Waltrick, Daniela, Awruch, Cynthia, and Simpfendorfer, Colin (2012) Embryonic diapause in the elasmobranchs. Reviews in Fish Biology and Fisheries, 22 (4). pp. 849-859.

Sweet, Michael, Kirkham, Nigel, Bendall, Mark, Currey, Leanne, Bythell, John, and Heupel, Michelle (2012) Evidence of melanoma in wild marine fish populations. PLoS One, 7 (8). e41989. e41989.

Knip, D.M., Heupel, M.R., and Simpfendorfer, C.A. (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784.

Olaganathan, Rajee, and Patterson, Jamila (2012) Histological changes in the target organs of channa punctatus after exposure to anthraquinone vat dyes. Journal of Ecotoxicology and Environmental Monitoring, 22 (5). pp. 443-449.

Moore, B.R., Welch, D.J., Newman, S.J., and Lester, R.J.G. (2012) Parasites as indicators of movement and population connectivity of a non-diadromous, tropical estuarine teleost: king threadfin Polydactylus macrochir. Journal of Fish Biology, 81 (1). pp. 230-252.

Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657.

Milano, Ilaria, Babbucci, Massimiliano, Panitz, Frank, Ogden, Rob, Nielsen, Rasmus O., Taylor, Martin I., Helyar, Sarah J., Carvalho, Gary R., Espiñeira, Montserrat, Atanassova, Miroslava, Tinti, Fausto, Maes, Gregory E., Patarnello, Tomaso, FishPop Trace Consortium, , and Bargelloni, Luca (2011) Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS ONE, 6 (11). e28008. pp. 1-13.

Kinney, Michael J., Hussey, Nigel E., Fisk, Aaron T., Tobin, Andrew J., and Simpfendorfer, Colin A. (2011) Communal or competitive? Stable isotope analysis provides evidence of resource partitioning within a communal shark nursery. Marine Ecology Progress Series, 439. pp. 263-276.

Miller, Penny A., Fitch, Alison J., Gardner, Michael, Hutson, Kate S., and Mair, Graham (2011) Genetic population structure of Yellowtail Kingfish (Seriola lalandi) in temperate Australasian waters inferred from microsatellite markers and mitochondrial DNA. Aquaculture, 319 (3-4). pp. 328-336.

Chapman, Demian S., Simpfendorfer, Colin A., Wiley, Tonya R., Poulakis, Gregg R., Curtis, Caitlin, Tringali, Michael, Carlson, John K., and Feldheim, Kevin A. (2011) Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata). Journal of Heredity, 102 (6). pp. 643-652.

Broderick, D., Ovenden, J.R., Buckworth, R.C., Newman, S.J., Lester, R.J.G., and Welch, D.J. (2011) Genetic population structure of grey mackerel Scomberomorus semifasciatus in northern Australia. Journal of Fish Biology, 79 (3). pp. 633-661.

Cuveliers, E.L., Volckaert, F.A.M., Rijnsdorp, A.D., Larmuseau, M.H.D., and Maes, G.E. (2011) Temporal genetic stability and high effective population size despite fisheries-induced life-history trait evolution in the North Sea sole. Molecular Ecology, 20 (17). pp. 3555-3568.

Morgan, Jess A.T., Welch, David J., Harry, Alistair V., Street, Raewyn, Broderick, Damien, and Ovenden, Jennifer R. (2011) A mitochondrial species identification assay for Australian blacktip sharks (Carcharhinus tilstoni, C. limbatus and C. amblyrhynchoides) using real-time PCR and high-resolution melt analysis. Molecular Ecology, 11 (5). pp. 813-819.

Ovenden, Jennifer R., Morgan, Jess A.T., Street, Raewyn, Tobin, Andrew, Simpfendorfer, Colin, Macbeth, William, and Welch, David (2011) Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology. Marine Biology, 158 (7). pp. 1497-1509.

Andrello, Marco, Bevacqua, Daniele, Maes, Gregory E., and De Leo, Giulio A. (2011) An integrated genetic-demographic model to unravel the origin of genetic structure in European eel (Anguilla anguilla L.). Evolutionary Applications, 4 (4). pp. 517-533.

Harry, Alastair V., Tobin, Andrew J., Simpfendorfer, Colin A., Welch, David J., Mapleston, Amos, White, Jimmy, Williams, Ashley J., and Stapley, Jason (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2011) Shark biology, ecology and management: introduction. Marine and Freshwater Research, 62 (6). p. 517.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62 (6). pp. 658-667.

Simpfendorfer, C.A., Heupel, M.R., White, W.T., and Dulvy, N.K. (2011) The importance of research and public opinion to conservation management of sharks and rays: a synthesis. Marine and Freshwater Research, 62 (6). pp. 518-527.

Harry, A.V., MacBeth, W.G., Gutteridge, A.N., and Simpfendorfer, C.A. (2011) The life histories of endangered hammerhead sharks (Carcharhiniformes, Sphyrnidae) from the east coast of Australia. Journal of Fish Biology, 78 (7). pp. 2026-2051.

Williams, Ashley J., Little, L. Richard, and Begg, Gavin A. (2011) Balancing indigenous and non-indigenous commercial objectives in a coral reef finfish fishery. ICES Journal of Marine Science, 68 (5). pp. 834-847.

Heupel, Michelle R., Knip, Danielle M., de Lestang, Paul, Allsop, Quentin A., and Grace, Blair S. (2011) Short-term movement of barramundi in a seasonally closed freshwater habitat. Aquatic Biology, 12 (2). pp. 147-155.

Als, Thomas D., Hansen, Michael M., Maes, Gregory E., Castonguay, Martin, Riemann, Lasse, Aarestrup, Kim, Munk, Peter, Sparholt, Henrik, Hanel, Reinhold, and Bernatchez, Louis (2011) All roads lead to home: panmixia of European eel in the Sargasso Sea. Molecular Ecology, 20 (7). pp. 1333-1346.

Olin, Jill A., Hussey, Nigel E., Fritts, Mark, Heupel, Michelle R., Simpfendorfer, Colin A., Poulakis, Gregg R., and Fisk, Aaron T. (2011) Maternal meddling in neonatal sharks: implications for interpreting stable isotopes in young animals. Rapid Communications in Mass Spectrometry, 25 (8). pp. 1008-1016.

Bednarek, Angela T., Cooper , Andrew B., Cresswell, Katherine A., Mangel, Marc, Satterthwaite, William H., Simpfendorfer, Colin A., and Wiedenmann, John R. (2011) The certainty of uncertainty in marine conservation and what to do about it. Bulletin of Marine Science, 87 (2). pp. 177-195.

Bang Jensen, Britt, Holopainen, Riikka, Tapiovaara, Hannele, and Ariel, Ellen (2011) Susceptibility of pike-perch Sander lucioperca to a panel of ranavirus isolates. Aquaculture, 313 (1-4). pp. 24-30.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425. pp. 233-246.

Moore, B.R., Stapley, J., Allsop, Q., Newman, S.J., Ballagh, A., Welch, D.J., and Lester, R.J.G. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites. Journal of Fish Biology, 78 (3). pp. 923-936.

Simpfendorfer, Colin A., Yeiser, Beau G., Wiley, Tonya R., Poulakis, Gregg R., Stevens, Philip W., and Heupel, Michelle R. (2011) Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6 (2). e16918. pp. 1-12.

Schaerlaekens, Dirk G., Dekker, Willem, Wickström, Håkan, Volckaert, Filip A.M., and Maes, Gregory E. (2011) Extracting a century of preserved molecular and population demographic data from archived otoliths in the endangered European eel (Anguilla anguilla L.). Journal of Experimental Marine Biology and Ecology, 398 (1-2). pp. 56-62.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Holopainen, Riikka, Honkanen, Jarno, Bang Jensen, Britt, Ariel, Ellen, and Tapiovaara, Hannele (2011) Quantitation of ranaviruses in cell culture and tissue samples. Journal of Virological Methods, 171 (1). pp. 225-233.

Hutson, K.S., Brock, E.L., and Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology, 78 (1). pp. 166-182.

Poulakis, Gregg R., Stevens, Philip W., Timmers, Amy A., Wiley, Tonya R., and Simpfendorfer, Colin A. (2011) Abiotic affinities and spatiotemporal distribution of the endangered smalltooth sawfish, Pristis pectinata, in a south-western Florida nursery. Marine and Freshwater Research, 62 (10). pp. 1165-1177.

Awruch, C.A., Simpfendorfer, C., and Pankhurst, N.W. (2011) Evaluation and use of a portable field kit for measuring whole-blood lactate in sharks. Marine and Freshwater Research, 62 (6). pp. 694-699.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Moore, B.R., Welch, D.J., and Simpfendorfer, C.A. (2011) Spatial patterns in the demography of a large estuarine teleost: king threadfin, Polydactylus macrochir. Marine and Freshwater Research, 62 (8). pp. 937-951.

Newman, S.J., Pember, M.B., Rome, B.M., Mitsopoulos, G.E.A., Skepper, C.L., Allsop, Q., Saunders, T., Ballagh, A.C., van Herwerden, L., Garrett, R.N., Gribble, N.A., Stapley, J.M., Meeuwig, J.J., Moore, B.R., and Welch, D.J. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate. Fisheries Management and Ecology, 18 (3). pp. 246-257.

Newman, Stephen J., Allsop, Quentin, Ballagh, Aaron C., Garrett, Rod N., Gribble, Neil, Meeuwig, Jessica J., Mitsopoulos, Gabby E.A., Moore, Bradley R., Pember, Matthew B., Rome, Ben M., Saunders, Thor, Skepper, Craig L., Stapley, Jason M., van Herwerden, Lynne, and Welch, David J. (2010) Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure. Journal of Experimental Marine Biology and Ecology, 396 (1). pp. 53-60.

Harry, Alastair V., Simpfendorfer, Colin A., and Tobin, Andrew J. (2010) Improving age, growth, and maturity estimates for aseasonally reproducing chondrichthyans. Fisheries Research, 106 (3). pp. 393-403.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Incorporating local tenure in the systematic design of marine protected area networks. Conservation Letters, 3 (6). pp. 445-453.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

MacNeil, M. Aaron, Graham, Nicholas A.J., Cinner, Joshua E., Dulvy, Nicholas K., Loring, Philip A., Jennings, Simon, Polunin, Nicholas V., Fisk, Aaron T., and McClanahan, Tim R. (2010) Transitional states in marine fisheries: adapting to predicted global change. Philosophical Transactions of the Royal Society B: Biological Sciences, 365 (1558). pp. 3753-3763.

Fabinyi, Michael, Knudsen, Magne, and Segi, Shio (2010) Social complexity, ethnography and coastal resource management in the Philippines. Coastal Management, 38 (6). pp. 617-632.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.

Marriot, Ross J., Mapstone, Bruce D., Ballagh, Aaron C., Currey, Leanne M., Penny, Anne, Williams, Ashley J., Jackson, Gary, Lou, Dongchun, Mapleston, Amos J., Jarvis, Nicholas D.C., Keay, Ian S., and Newman, Stephen J. (2010) Accepting final counts from repeat readings of otoliths: should a common criterion apply to the age estimation of fish? Marine and Freshwater Research, 61 (10). pp. 1171-1184.

Heupel, M.R., and Simpfendorfer, C.A. (2010) Science or slaughter: need for lethal sampling of sharks. Conservation Biology, 24 (5). pp. 1212-1218.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Simpfendorfer, Colin A., Wiley, Tonya R., and Yeiser, Beau G. (2010) Improving conservation planning for an endangered sawfish using data from acoustic telemetry. Biological Conservation, 143 (6). pp. 1460-1469.

Fabinyi, Michael (2010) The intensification of fishing and the rise of tourism: competing coastal livelihoods in the Calamianes Islands, Philippines. Human Ecology, 38 (3). pp. 415-427.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Shortcuts for marine conservation planning: the effectiveness of socioeconomic data surrogates. Biological Conservation, 143 (5). pp. 1236-1244.

Williams, Ashley J., Little, L. Richard, Punt, André E., Mapstone, Bruce D., Davies, Campbell R., and Heupel, Michelle R. (2010) Exploring movement patterns of an exploited coral reef fish when tagging data are limited. Marine Ecology Progress Series, 405. pp. 87-99.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Heupel, Michelle R., Simpfendorfer, Colin A., and Fitzpatrick, Richard (2010) Large–scale movement and reef fidelity of grey reef sharks. PLoS ONE, 5 (3). e9650. pp. 1-5.

Cuveliers, E.L., Geffen, A.J., Guelinckx, J., Raeymaekers, J.A.M., Skadal, J., Volckaert, F.A.M., and Maes, G.E. (2010) Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea. Marine Ecology Progress Series, 401. pp. 211-220.

Griffiths, Shane P., Fry, Gary C., Manson, Fiona J., and Lou, Dong C. (2010) Age and growth of longtail tuna (Thunnus tonggol) in tropical and temperate waters of the central Indo-Pacific. ICES Journal of Marine Science, 67 (1). pp. 125-134.

Cortés, Enric, Arocha, Freddy, Beerkircher, Lawrence, Carvalho, Felipe, Domingo, Andrés, Heupel, Michelle, Holtzhausen, Hannes, Santos, Miguel N., Ribera, Marta, and Simpfendorfer, Colin (2010) Ecological risk assessment of pelagic sharks caught in Atlantic pelagic longline fisheries. Aquatic Living Resources, 23 (1). pp. 25-34.

Heupel, Michelle R., Williams, Ashley J., Welch, David J., Davies, Campbell R., Penny, Ann, Kritzer, Jacob P., Marriott, Ross J., and Mapstone, Bruce D. (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432.

Heupel, Michelle R., Williams, Ashley, Welch, David J., Davies, Campbell R., Adams, Samantha, Carlos, Gary, and Mapstone, Bruce D. (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195.

Feldheim, Kevin A., Chapman, Demian D., Simpfendorfer, Colin A., Richards, Vincent P., Shivji, Mahmood S., Wiley, Tonya R., Poulakis, Gregg R., Carlson, John K., Eng, Rowena, and Sagarese, Skyler (2010) Genetic tools to support the conservation of the endangered smalltooth sawfish, Pristis pectinata. Conservation Genetics Resources, 2 (1). pp. 105-113.

Heupel, Michelle R., Yeiser, Beau G., Collins, Angela B., Ortega, Lori, and Simpfendorfer, Colin A. (2010) Long-term presence and movement patterns of juvenile bull sharks, Carcharhinus leucas, in an estuarine river system. Marine and Freshwater Research, 61 (1). pp. 1-10.

Johnson, Johanna E., and Welch, David J. (2010) Marine fisheries management in a changing climate: a review of vulnerability and future options. Reviews in Fisheries Science, 18 (1). pp. 106-124.

Coppe, Alessandro, Pujolar, Jose Martin, Maes, Gregory E., Larsen, Peter F., Hansen, Michael M., Bernatchez, Louis, Zane, Lorenzo, and Bortoluzzi, Stefania (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, 11. 635. pp. 1-13.

Welch, David J., Mapstone, Bruce D., Davies, Campbell C., and Russ, Garry R. (2010) Spatial and fishing effects on sampling gear biases in a tropical reef line fishery. Marine and Freshwater Research, 61 (10). pp. 1134-1146.

Newman, Stephen J., Wright, Ian W., Rome, Ben M., Mackie, Michael C., Lewis, Paul D., Buckworth, Rik C., Ballagh, Aaron C., Garrett, Rod N., Stapley, Jason, Broderick, Damien, Ovenden, Jennifer R., and Welch, David J. (2010) Stock structure of Grey Mackerel, Scomberomorus semifasciatus (Pisces: Scombridae) across northern Australia, based on otolith stable isotope chemistry. Environmental Biology of Fishes, 89 (3-4). pp. 357-367.

Wiley, Tonya R., and Simpfendorfer, Colin A. (2010) Using public encounter data to direct recovery efforts for the endangered smalltooth sawfish Pristis pectinata. Endangered Species Research, 12 (3). pp. 179-191.

Charters, Robbie A., Lester, Robert J.G., Buckworth, Rik C., Newman, Stephen J., Ovenden, Jennifer R., Broderick, Damien, Kravchuck, Olena, Ballagh, Aaron, and Welch, David J. (2010) The stock structure of grey mackerel Scomberomorus semifasciatus in Australia as inferred from its parasite fauna. Fisheries Research, 101 (1-2). pp. 94-99.

McClanahan, Tim R., Graham, Nicholas A.J., Wilson, Shaun, Letourner, Yves, and Fisher, Rebecca (2009) Effects of fisheries closure size, age, and history of compliance on coral reef fish communities in the western Indian Ocean. Marine Ecology Progress Series, 396. pp. 99-109.

Little, L. Richard, Punt, André E., Mapstone, Bruce D., Begg, Gavin A., Goldman, Barry, and Ellis, Nick (2009) Different responses to area closures and effort controls for sedentary and migratory harvested species in a multispecies coral reef linefishery. ICES Journal of Marine Science, 66 (9). pp. 1931-1941.

van Herwerden, Lynne, Aspden, William J., Newman, Stephen J., Pegg, Graham G., Briskey, Leica, and Sinclair, William (2009) A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: evidence for panmixia and isolation. Fisheries Research, 100 (2). pp. 148-155.

Little, L. Richard, Punt, Andre E., Mapstone, Bruce D., Begg, Gavin A., Goldman, Barry, and Williams, Ashley J. (2009) An agent-based model for simulating trading of multi-species fisheries quota. Ecological Modelling, 220 (23). pp. 3404-3412.

Stockwell, Brian, Jadloc, Claro Renato L., Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2009) Trophic and benthic responses to no-take marine reserve protection in the Philippines. Marine Ecology Progress Series, 389. pp. 1-15.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Sutton, Stephen G., and Tobin, Renae C. (2009) Recreational fishers’ attitudes towards the 2004 rezoning of the Great Barrier Reef Marine Park. Environmental Conservation, 36 (3). pp. 245-252.

Balston, Jacqueline (2009) An analysis of the impacts of long-term climate variability on the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Fisheries Research, 99 (2). pp. 83-89.

Carter, A.B., Williams, A.J., and Russ, G.R. (2009) Increased accuracy of batch fecundity estimates using oocyte stage ratios in Plectropomus leopardus. Journal of Fish Biology, 75 (3). pp. 716-722.

van Herwerden, Lynne, Choat, J. Howard, Newman, Stephen J., Leray, Mattieu, and Hillersoy, Grethe (2009) Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management. Marine Biology, 156 (8). pp. 1595-1607.

Thorson, James T., and Simpfendorfer, Colin A. (2009) Gear selectivity and sample size effects on growth curve selection in shark age and growth studies. Fisheries Research, 98 (1-3). pp. 75-84.

Maes, G.E., van Vo, B., Crivelli, A.J., and Volckaert, F.A.M. (2009) Morphological and genetic seasonal dynamics of European eel Anguilla anguilla recruitment in southern France. Journal of Fish Biology, 74 (9). pp. 2047-2068.

Cuveliers, E.L., Bolle, L.J., Volckaert, F.A.M., and Maes, G.E. (2009) Influence of DNA isolation from historical otoliths on nuclear–mitochondrial marker amplification and age determination in an overexploited fish, the common sole (Solea solea L.). Molecular Ecology Resources, 9 (3). pp. 725-732.

Pujolar, J.M., Maes, G.E., Van Houdt, J.K.J., and Zane, L. (2009) Isolation and characterization of expressed sequence tag-linked microsatellite loci for the European eel (Anguilla anguilla). Molecular Ecology Resources, 9 (1). pp. 233-235.

Williams, Ashley J., Davies, Campbell R., Mapstone, Bruce D., Currey, Leanne M., Welch, David J., Begg, Gavin, A., Ballagh, Aaron C., Choat, J. Howard, Murchie, Cameron D., and Simpfendorfer, Colin A. (2009) Age-based demography of humpback grouper Cromileptes altivelis: implications for fisheries management and conservation. Endangered Species Research, 9 (1). pp. 67-79.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2. pp. 1-4.

Simpfendorfer, Colin A., and Kyne, Peter M. (2009) Limited potential to recover from overfishing raises concerns for deep-sea sharks, rays and chimaeras. Environmental Conservation, 36. pp. 97-103.

Balston, Jacqueline (2009) Short-term climate variability and the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Marine and Freshwater Research, 60 (9). pp. 912-923.

Trip, Elisabeth L., Choat, J. Howard, Wilson, David T., and Robertson, D. Ross (2008) Inter-oceanic analysis of demographic variation in a widely distributed Indo-Pacific coral reef fish. Marine Ecology Progress Series, 373. pp. 97-109.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Williams, Ashley J., Ballagh, Aaron C., Begg, Gavin A., Murchie, Cameron D., and Currey, Leanne M. (2008) Harvest patterns and effort dynamics of indigenous and non-indigenous commercial sectors of the eastern Torres Strait reef line fishery. Continental Shelf Research, 28 (16). pp. 2117-2128.

Williams, Ashley J., Currey, Leanne M., Begg, Gavin A., Murchie, Cameron D., and Ballagh, Aaron C. (2008) Population biology of coral trout species in eastern Torres Strait: implications for fishery management. Continental Shelf Research, 28 (16). pp. 2129-2142.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

Welch, David J., Mapstone, Bruce D., and Begg, Gavin A. (2008) Spatial and temporal variation and effects of changes in management in discard rates from the commercial reef line fishery of the Great Barrier Reef, Australia. Fisheries Research, 90 (1-3). pp. 247-260.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353. pp. 55-63.

Meynecke, J-O., Lee, S.Y., and Duke, N.C. (2008) Linking spatial metrics and fish catch reveals the importance of coastal wetland connectivity to inshore fisheries in Queensland, Australia. Biological Conservation, 141 (4). pp. 981-996.

Mapstone, B.D., Little, L.R., Punt, A.E., Davies, C.R., Smith, A.D.M., Pantus, F., McDonald, A.D., Williams, A.J., and Jones, A. (2008) Management strategy evaluation for line fishing in the Great Barrier Reef: balancing conservation and multi-sector fishery objectives. Fisheries Research, 94 (3). pp. 315-329.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Hutson, Kate S., Ernst, Ingo, Mooney, Allan J., and Whittington, Ian D. (2007) Metazoan parasite assemblages of wild Seriola lalandi (Carangidae) from eastern and southern Australia. Parasitology International, 56 (2). pp. 95-105.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman C., and Warnken, Jan (2007) Relationships between estuarine habitats and coastal fisheries in Queensland, Australia. Bulletin of Marine Science, 80 (3). pp. 773-793.

Maes, Gregory E., and Volckaert, Filip A.M. (2007) Challenges for genetic research in European eel management. ICES Journal of Marine Science, 64 (7). pp. 1463-1471.

Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, Polunin, Nicholas V.C., Robinson, Jan, Bijoux, Jude P., and Daw, Tim M. (2007) Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems. Conservation Biology, 21 (5). pp. 1291-1300.

Hutson, Kate S., and Whittington, Ian D. (2006) Paradeontacylix godfreyi n. sp. (Digenea: Sanguinicolidae) from the heart of wild Seriola lalandi (Perciformes: Carangidae)in southern Australia. Zootaxa, 1151. pp. 55-68.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman, and Warnken, Jan (2006) Effect of rainfall as a component of climate change on estuarine fish production in Queensland, Australia. Estuarine, Coastal and Shelf Science , 69 (3-4). pp. 491-504.

York, P.H., Booth, D.J., Glasby, T.M., and Pease, B.C. (2006) Fish assemblages in habitats dominated by Caulerpa taxifolia and native seagrasses in south-eastern Australia. Marine Ecology Progress Series, 312. pp. 223-234.

So, Nam, Maes, Gregory E., and Volckaert, Filip A.M. (2006) Intra-annual genetic variation in the downstream larval drift of sutchi catfish (Pangasianodon hypophthalmus) in the Mekong river. Biological Journal of the Linnean Society, 89 (4). pp. 719-728.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76. pp. 47-67.

McAuley, Rory B., Simpfendorfer, Colin A., Hyndes, Glenn .A., Allison, Rick R., Chidlow, Justin A., Newman, Stephen J., and Lenanton, Rod C.J. (2006) Validated age and growth of the sandbar shark, Carcharhinus plumbeus (Nardo, 1827) in the waters of Western Australia. Environmental Biology of Fishes, 77. pp. 385-400.

McClanahan, T.R., and Graham, N. A. J. (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series, 294. pp. 241-248.

Keeney, D.B., Heupel, M.R., Hueter, R.E., and Heist, E.J. (2005) Microsatellite and mitochondrial DNA analyses of the genetic structure of blacktip shark (Carcharhinus limbatus) nurseries in the northwestern Atlantic, Gulf of Mexico and Caribbean Sea. Molecular Ecology, 14 (7). pp. 1911-1923.

Dannewitz, Johan, Maes, Gregory E., Johansson, Leif, Wickström, Håkan, Volckaert, Filip A.M., and Järvi, Torbjörn (2005) Panmixia in the European eel: a matter of time... Proceedings of the Royal Society of London Series B, Biological Sciences, 272 (1568). pp. 1129-1137.

Graham, N.A.J., Dulvy, N.K., Jennings, S., and Polunin, N.V.C. (2005) Size spectra as indicators of fishing effects on coral reef fish assemblages. Coral Reefs, 24 (1). pp. 118-124.

Tobin, Renae (2005) Competition and conflict between recreational and commercial gillnet fishers in north Queensland estuaries: perception or reality? Fishing for More: A student-stakeholder workshop on the biology, ecology, sociology and economics of fisheries, 1. pp. 84-108.

Burgess, George H., Beerkircher, Lawrence R., Cailliet, Gregor M., Carlson, John K., Cortes, Enric, Goldman, Kenneth J., Grubbs, R. Dean, Musick, John A., Musyl, Michael K., and Simpfendorfer, Colin A. (2005) Is the collapse of shark populations in the Northwest Atlantic Ocean and Gulf of Mexico real? Fisheries, 30 (10). pp. 19-26.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Dulvy, N.K, Polunin, N.V.C., Mill, A.C., and Graham, N.A.J. (2004) Size structural change in lightly exploited coral reef fish communities: evidence for weak indirect effects. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 446-475.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35. pp. 239-247.

Keeney, D.B., Heupel, M.R., Hueter, R.E., and Heist, E.J. (2003) Genetic evidence of stock structure among blacktip shark, Carcharhinus limbatus, continental nurseries along the U.S. Atlantic and Gulf of Mexico. Marine Biology, 143 (6). pp. 1039-1046.

McAuley, Rory B., and Simpfendorfer, Colin A. (2003) Catch composition of Western Australia’s temperate demersal gillnet and demersal longline fisheries, 1994 to 1999. Western Australian Fisheries Research Reports, 146. pp. 1-84.

Robertson, A.I., and Duke, N.C. (1987) Mangroves as nursery sites: comparisons of the abundance and species composition of fish and crustaceans in mangroves and other nearshore habitats in tropical Australia. Marine Biology, 96 (2). pp. 193-205.

Book Chapter

Chin, A., Cameron, D., and Saunders, R. (2019) Fisheries of the Great Barrier Reef. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 117-130.

Belpaire, Claude, Pujolar, José Martin, Geeraerts, Caroline, and Maes, Gregory E. (2016) Contaminants in eels and their role in the collapse of the eel stocks. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 225-250.

Pujolar, José Martin, and Maes, Gregory E. (2016) Evolutionary genomics of North Atlantic eels: current status and perspectives. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 36-51.

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Carrier, Jeffrey C., Musick, John A., and Heithaus, Michael R., (eds.) Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Heimann, Kirsten, Capper, Angela, and Sparrow, Leanne (2011) Ocean surface warming: impact on toxic benthic dinoflagellates causing ciguatera. In: UNSPECIFIED, (ed.) eLS. Wiley-Blackwell, pp. 1-8.

Tobin, Renae C., and Sutton, Stephen G. (2011) Perceived benefits and costs of Recreational Only Fishing Areas to the recreational and commercial estuarine fishery within north Queensland. In: Beard, T. D., Arlinghaus, R., and Sutton, S.G., (eds.) The Angler and the Environment: social, economic, biological and ethical dimensions. Proceedings of the fifth world recreational fishing conference. American Fisheries Society Symposium, 75 . American Fisheries Society, Bethesda, MD, USA, pp. 125-138.

Martinshohn, J.T., Geffen, A.J., Maes, G.E., Nielsen, E.E., Ogden, R., Waples, R.S., and Carvalho, G.R. (2011) Tracing fish and fish products from ocean to fork using advanced molecular technologies. In: Hoorfar, J., Jordan, K., Butler, F., and Prugger, R., (eds.) Food Chain Integrity: a holistic approach to food traceability, safety, quality and authenticity. Woodhead Publishing Series in Food, Science, Technology and Nutrition . Woodhead Publishing, Cambridge, UK, pp. 259-282.

Kyne, Peter M., and Simpfendorfer, Colin A. (2010) Deepwater Chondrichthyans. In: Carrier, Jeffery C., Musick, John A., and Heithaus, Michael R., (eds.) Sharks and their Relatives II: Biodiversity, Adaptive Physiology, and Conservation. CRC Marine Biology Series . CRC Press, Taylor and Francis Group, Boca Raton, Florida, USA, pp. 37-113.

Maes, Gregory E., Pujolar, Marti, and Volckaert, Filip (2009) Evolutionary consequences of eel migration. In: van den Thillart, Guido, Dufour, Sylvie, and Rankin, J. Cliff, (eds.) Spawning Migration of the European Eel: reproduction index, a useful tool for conservation management. Fish and Fisheries Series, 30 . Springer, pp. 401-432.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: McCandless, Camilla T., Kohler, Nancy E., and Pratt Jr., Harold L., (eds.) Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Simpfendorfer, Colin A. (2005) Demographic Models: life tables, matrix models and rebound potential. In: Musick, John A., and Bonfil, Ramon, (eds.) Management Techniques for Elasmobranch Fisheries. FAO Fisheries Technical Paper (474). Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 143-153.

Simpfendorfer, Colin A., Bonfil, Ramon, and Latour, Robert J. (2005) Mortality estimation. In: Musick, John A., and Bonfil, Ramon, (eds.) Management Techniques for Elasmobranch Fisheries. FAO Fisheries Technical Paper (474). Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 165-185.

Report

Jerry R., Dean, Smith-Keune, Carolyn, Hodgson, Lauren, Pirozzi, Igor, Carton, A. Guy, Hutson, Kate S., Brazenor, Alexander K., Trujillo Gonzalez, Alejandro, Gamble, Stephen, Collins, Geoff, and Vanderwal, Jeremy (2013) Vulnerability of an Iconic Australian Finfish (Barramundi - Lates calcarifer) and Aligned Industries to Climate Change across Tropical Australia. Report. Fisheries Research and Development Corporation, Douglas, QLD, Australia.

Welch, D.J., Ovenden, J., Simpfendorfer, C., Tobin, A., Morgan, J.A.T., Street, R., White, J., Harry, A., Schroeder, R., and Macbeth, W.G. (2011) Stock structure of exploited shark species in north-eastern Australia. Report to the Fisheries Research & Development Corporation, Project 2007/035. Fishing & Fisheries Research Centre Technical Report No. 12. Report. Fisheries Research and Development Corporation, James Cook University, Townsville, QLD, Australia.

Welch, D.J., Ballagh, A., Newman, S.J., Lester, R.J., Moore, B., van Herwerden, L., Horne, J., Allsop, Q., Saunders, T., Stapley, J., and Gribble, N.A. (2010) Defining the Stock Structure of Northern Australia's Threadfin Salmon Species. Report. James Cook University, Townsville, QLD, Australia.

Tobin, A., Schlaff, A., Tobin, R., Penny, A., Ayling, Anthony, Krause, B., Welch, D., Sutton, S., Sawynok, B., Marshall, N., Marshall, P., and Maynard, J. (2010) Adapting to Change: Minimising Uncertainty about the Effects of Rapidly-Changing Environmental Conditions on the Queensland Coral Reef Fin Fish Fishery. Report. Fishing and Fisheries Research Centre, James Cook University, Townsville, Qld, Australia.

Tobin, R.C., Sutton, S.G., Penny, A., Williams, L., Maroske, J., and Nilsson, J. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part A: Commercial Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD. Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part D: Seafood Consumers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Nilsson, J.A., Sutton, S.G., and Tobin, R.C. (2010) A Community Survey of Climate Change and the Great Barrier Reef. Report. Reef and Rainforest Research Centre, Cairns.

Tobin, R.C., Sutton, S.G., and Penny, A.L. (2010) Towards Evaluating the Socio-economic Impacts of Changes to Queensland’s Inshore Fishery Management. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Welch, D.J., Buckworth, R.C., Ovenden, J.R., Newman, S.J., Broderick, D., Lester, R.J.G., Ballagh, A.C., Stapley, J., Charters, R.A., and Gribble, N.A. (2009) Determination of management units for grey mackerel fisheries in northern Australia. Report. James Cook University, Townsville, Queensland, Australia.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Brown, I.W., Sumpton, W.D., McLennan, M., Welch, D.J., Kirkwood, J., Butcher, A., Mapleston, A., Mayer, D., Begg, G., Campbell, M., Halliday, I., and Sawynok, W. (2008) National Strategy for the Survival of Released Line-Caught Fish: tropical reef species (FRDC 2003/019). Report. Department of Primary Industries and Fisheries.

Little, L. Rich, Begg, Gavin A., Goldman, Barry, Ellis, Nick, Mapstone, Bruce D., Punt, André E., Jones, Annabel, Sutton, Steve, and Williams, Ashley (2008) Modelling Multi-Species Targeting of Fishing Effort in the Queensland Coral Reef Fin Fish Fishery. Report. James Cook University Fishing & Fisheries Research Centre, Townsville, QLD, Australia.

McCormack, Catherine (2007) Annual status report Queensland Finfish (Stout Whiting) trawl fishery 2007. Report. Queensland Department of Primary Industries and Fisheries, Brisbane, QLD, Australia.

Smith, Tara, and McCormack, Catherine (2007) Ecological Risk Assessment of the Other Species component of the Coral Reef Fin Fish Fishery. Report. Queensland Department of Primary Industries and Fisheries, Brisbane, QLD, Australia.

McCormack, Catherine (2006) Annual status report 2005 Finfish (Stout Whiting) trawl fishery. Report. Queensland Department of Primary Industries and Fisheries, Brisbane, QLD, Australia.

Tobin, R.C., Pears, R., Marshall, N., Marriott, R., Busilacchi, S., and Bergenius, M.A.J. (2005) Fishing for More: a student-stakeholder workshop on the biology, ecology, sociology and economics of fisheries. Report. CRC Reef Research Centre , Townsville, QLD, Australia.

Conference Item

Hixon, M.A., Cinner, J.E., Feary, D.A., Green, A.L., Hamilton, R.J., Jones, Geoff, and Jupiter, S.D. (2016) Reef fish ecology, conservaton, and fisheries: the scientific legacy of Glenn Almany. In: Proceedings of the 13th International Coral Reef Symposium. 20. pp. 159-168. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Little, L. Richard, Punt, André E., Mapstone, Bruce D., Begg, Gavin A., Goldman, Barry, and Williams, Ashley (2009) A model for simulating trading of fisheries quota. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 2136-2142. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Book

Tobin, Renae (2010) Recreational Only Fishing Areas: have they reduced conflict and improved recreational catches in North Queensland, Australia? Lambert Academic Publishing, Saarbrücken, Germany.

Thesis

Baje, Leontine Immoine (2019) The biology and ecology of carcharhiniform sharks in the Gulf of Papua prawn trawl fishery. PhD thesis, James Cook University.

Emslie, Michael J. (2016) Effects of habitat versus fisheries management on spatio-temperal variation in fish assemblages on the Great Barrier Reef. PhD thesis, James Cook University.

Waldie, Peter Anthony (2016) Investigating spatial aspects of the community-based management of a small-scale artisanal grouper fishery. PhD thesis, James Cook University.

Smart, Jonathan James (2016) Life history and demographic modelling of shark species caught in Indo-Pacific fisheries. PhD thesis, James Cook University.

Hopf, Jessica Kay (2016) The short- & long-term implications of marine reserves for fisheries on coral reefs. PhD thesis, James Cook University.

Taylor, Brett McCully (2015) Environmental and fishery-induced effects on life histories and assemblages of parrotfishes. PhD thesis, James Cook University.

Lédée, Elodie Jacqueline Isabelle (2015) Improving understanding of spatial ecology through network analysis of acoustic monitoring data. PhD thesis, James Cook University.

Rigby, Cassandra Louise (2015) Life histories of deepwater chondrichthyans. PhD thesis, James Cook University.

Currey, Leanne Margaret (2015) Movement of an exploited coral reef teleost across multiple temporal and spatial scales. PhD thesis, James Cook University.

Carter, Alex B. (2015) Spatial variation in female reproduction for an exploited coral reef fish, Plectropomus leopardus. PhD thesis, James Cook University.

Robinson, Jan (2015) Vulnerability to fishing in reef fishes that aggregate. PhD thesis, James Cook University.

Hartley, Fraser Andrew (2013) Fear of fishers: anti-predator behaviour of coral reef fish and its relevance to fisheries management and conservation. PhD thesis, James Cook University.

Chin, Andrew (2013) The biology and ecology of the blacktip reef shark Carcharhinus melanopterus (Quoy & Gaimard, 1824) and implications for management. PhD thesis, James Cook University.

Cohen, Philippa Jane (2013) The contribution of locally managed marine areas to small-scale fisheries and food security: a Solomon Islands case study. PhD thesis, James Cook University.

Waltrick, Daniela de Souza (2013) The endocrine control of embryonic diapause in the Australian sharpnose shark Rhizoprionodon taylori. Masters (Research) thesis, James Cook University.

Szczecinski, Natasha (2012) Catch susceptibility and life history of barred javelin (Pomadasys kaakan) in north eastern Queensland, Australia. Masters (Research) thesis, James Cook University.

Harrison, Hugo B. (2012) Genetic parentage analysis as a tool for measuring larval connectivity in a network of marine reserves. PhD thesis, James Cook University.

Wen, Colin Kuo-Chang (2012) Recruitment hotspots in the ecology and management of large predatory fishes on coral reefs. PhD thesis, James Cook University.

Harry, Alastair Varley (2011) Life histories of commercially important tropical sharks from the Great Barrier Reef World Heritage Area. PhD thesis, James Cook University.

Moore, Bradley Roland (2011) Movement, connectivity and population structure of a large, non-diadromous, tropical estuarine teleost. PhD thesis, James Cook University.

Knip, Danielle Melissa (2011) Spatial ecology of mobile predators in a nearshore tropical environment and its implication for marine protected areas. PhD thesis, James Cook University.

Schroeder, Ron (2011) Utilisation of vertebral microchemistry techniques to determine population structure of two inshore shark species along the east coast of Queensland, Australia. Masters (Research) thesis, James Cook University.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Muldoon, Geoffrey James (2009) Innovation and capacity in fisheries: value-adding and the emergence of the live reef fish trade as part of the Great Barrier Reef reef line fishery. PhD thesis, James Cook University.

Muirhead, Elisabeth Knowles (2008) Polybrominated diphenyl ethers: levels in Townsville sediments, depuration and (anti-)estrogenic effects in Barramundi (Lates calcarifer). Masters (Research) thesis, James Cook University.

Busilacchi, Sara (2008) The subsistence coral reef fish fishery in the Torres Strait: monitoring protocols and assessment. PhD thesis, James Cook University.

Phelan, Michael John (2005) Indigenous subsistence fishing at Injinoo Aboriginal Community, northern Cape York Peninsula. Masters (Research) thesis, James Cook University.

Marriott, Ross James (2005) Population biology, dynamics and their implications for management of red bass: a large, long-lived reef fish. PhD thesis, James Cook University.

Hilomen, Vincent Velarde (1997) Inter- and intra-habitat movement patterns and population dynamics of small reef fishes of commercial and recreational significance. PhD thesis, James Cook University of North Queensland.

Matthews, Sue Janet (1997) The regulation of insulin-like growth factors in barramundi, Lates calcarifer. PhD thesis, James Cook University.