Publications by: Ira R. Cooke

Also publishes as (Ira Robin Cooke, Ira Cooke)

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Number of items: 17.

Shafee, Thomas, and Cooke, Ira (2016) AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments. BMC Bioinformatics, 17 (1). pp. 1-6.

Whitelaw, Brooke Lauren, Strugnell, Jan M., Faou, Pierre, da Fonseca, Rute R., Hall, Nathan, Norman, Mark, Finn, Julian, and Cooke, Ira Robin (2016) Combined transcriptomic and proteomic analysis of the posterior salivary gland from the southern blue-ringed octopus and the southern sand octopus. Journal of Proteome Research, 15 (9). pp. 3284-3297.

Nuez Ortin, Waldo, Carter, Chris G., Wilson, Richard, Cooke, Ira, and Nichols, Peter D. (2016) Preliminary validation of a high docosahexaenoic acid (DHA) and -linolenic acid (ALA) dietary oil blend: tissue fatty acid composition and liver proteome response in Atlantic salmon (Salmo salar) smolts. PLoS ONE, 11 (8). pp. 1-27.

Caruana, Nikeisha J., Cooke, Ira R., Faou, Pierre, Finn, Julian, Hall, Nathan E., Norman, Mark, Pineda, Sandy S., and Strugnell, Jan M. (2016) A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda). Journal of Proteomics, 148. pp. 170-182.

Robinson, Nick A., Hall, Nathan E., Ross, Elizabeth M., Cooke, Ira R., Shiel, Brett P., Robinson, Andrew J., and Strugnell, Jan M. (2016) The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27. pp. 437-438.

Hall, Nathan E., Hanzak, Jan, Allcock, A. Louise, Cooke, Ira R., Ogura, Atsushi, and Strugnell, Jan M. (2016) The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27 (1). pp. 5-6.

Nguyen, Vinh A., Carey, Leeanne M., Giummarra, Loretta, Faou, Pierre, Cooke, Ira, Howells, David W., Tse, Tamara, Macaulay, S. Lance, Ma, Henry, Davis, Stephen M., Donnan, Geoffrey A., and Crewther, Sheila G. (2016) A pathway proteomic profile of ischemic stroke survivors reveals innate immune dysfunction in association with mild symptoms of depression: a pilot study. Frontiers in Neurology, 7. pp. 1-16.

Murugesan, Selvaraaju, Tay, David B.H., Cooke, Ira, and Faou, Pierre (2015) Application of dual tree complex wavelet transform in tandem mass spectrometry. Computers in Biology and Medicine, 63. pp. 36-41.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A, and Strugnell, Jan M. (2015) De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family. Marine Biotechnology, 17. pp. 23-32.

Boekel, Jorrit, Chilton, John, Cooke, Ira, Horvatovich, Peter, Jagtap, Pratik, Kall, Lukas, Lehtiö, Janne, Lukasse, Pieter, Moerland, Perry, and Griffin, Timothy (2015) Multi-omic data analysis using Galaxy. Nature Biotechnology, 33. pp. 137-139.

Cooke, Ira R., Whitelaw, Brooke, Norman, Mark, Caruana, Nikeisha, and Strugnell, Jan (2015) Toxicity in cephalopods. In: Gopalakrishnakone, P., and Malhotra, Anita, (eds.) Evolution of Venomous Animals and Their Toxins. Toxinology . Springer, Leiden, The Netherlands, pp. 1-15.

Cooke, Ira R, Jones, Dan, Bowen, Joanna K, Deng, Cecilia, Faou, Pierre, Hall, Nathan E, Jayachandran, Vignesh, Liem, Michael, Taranto, Adam P, Plummer, Kim M, and Mathivanan, Suresh (2014) Proteogenomic analysis of the Venturia pirina (pear scab fungus) secretome reveals potential effectors. Journal of Proteome Research, 13 (8). pp. 3635-3644.

Cooke, Ira R., Mattison, Elizabeth H.A., Audsley, Eric, Bailey, Alison P., Freckleton, Robert P., Graves, Anil R., Morris, Joe, Queenborough, Simon A., Sandars, Daniel L., Siriwardena, Gavin M., Trawick, Paul, Watkinson, Andrew R., and Sutherland, William J. (2013) Empirical test of an agricultural landscape model: the importance of farmer preference for risk aversion and crop complexity. SAGE Open, 3. pp. 1-16.

Robinson, Nick, Smith, Ben, Cooke, Ira, and Strugnell, Jan (2013) A snail's pace: a preliminary analysis of the effects of stress and genetics on movement of Haliotis. Aquaculture, 376-379. pp. 25-35.

Appleby, Sarah L., Cockshell, Michaelia P., Pippal, Jyotsna B., Thompson, Emma J., Barrett, Jeffrey M., Tooley, Katie, Sen, Shaundeep, Sun, Wai Yan, Grose, Randall, Nicholson, Ian, Levina, Vitalina, Cooke, Ira, Talbo, Gert, Lopez, Angel F., and Bonder, Claudine S. (2012) Characterization of a distinct population of circulating human non-adherent endothelial forming cells and their recruitment via intercellular adhesion molecule-3. PLoS ONE, 7 (11).

Siriwardena, Gavin M., Cooke, Ira R., and Sutherland, William J. (2012) Landscape, cropping and field boundary influences on bird abundance. Ecography, 35 (2). pp. 162-173.

Allcock, A. Louise, Cooke, Ira R., and Strugnell, Jan M. (2011) What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda? Zoological Journal of the Linnean Society, 161 (3). pp. 573-586.

This list was generated on Thu Mar 30 14:53:52 2017 AEST.