Chartrand, K.N., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Port of Abbot Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Port of Abbot Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2019) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2017-2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bennett, Scott, Halford, Andrew R., Choat, J. Howard, Hobbs, Jean-Paul A., Santana-Garcon, Julia, Ayling, Anthony, Harvey, Euan S., and Newman, Stephen J. (2018) Geography and island geomorphology shape fish assemblage structure on isolated coral reef systems. Ecology and Evolution, 8 (12). pp. 6242-6252.

Emslie, Michael J., Logan, Murray, Williamson, David H., Ayling, Anthony M., MacNeil, M. Aaron, Ceccarelli, Daniela, Cheal, Alistair J., Evans, Richard D., Johns, Kerryn A, Jonker, Michelle J., Miller, Ian R., Osborne, Kate, Russ, Garry R., and Sweatman, Hugh P.A. (2015) Expectations and outcomes of reserve network performance following re-zoning of the Great Barrier Reef Marine Park. Current Biology, 25 (8). pp. 983-992.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Checklist and new records of Christmas Island fishes: the influence of isolation, biogeography and habitat availability on species abundance and community composition. Raffles Bulletin of Zoology, Supplement No. 30. pp. 184-202.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Fishes of the Cocos (Keeling) Islands: new records, community composition and biogeographic significance. Raffles Bulletin of Zoology: an international journal of Southeast Asian Zoology, Supplement 30. pp. 203-219.

Ceccarelli, Daniela M., Frisch, Ashley J., Graham, Nicholas A.J., Ayling, Anthony M., and Beger, Maria (2014) Habitat partitioning and vulnerability of sharks in the Great Barrier Reef Marine Park. Reviews in Fish Biology and Fisheries, 24 (1). pp. 169-197.

McCook, Laurence, Ayling, Anthony, Cappo, Mike, Choat, J. Howard, Evans, Richard D., De Freitas, Debora M., Heupel, Michelle, Hughes, Terry P., Jones, Geoffrey P., Mapstone, Bruce, Marsh, Helene, Mills, Morena, Molloy, Fergus J., Pitcher, C. Roland, Pressey, Robert L., Russ, Garry R., Sutton, Stephen, Sweatman, Hugh, Tobin, Renae, Wachenfeld, David R., and Williamson, David H. (2010) Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). 18278- 18285.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Tobin, A., Schlaff, A., Tobin, R., Penny, A., Ayling, Anthony, Krause, B., Welch, D., Sutton, S., Sawynok, B., Marshall, N., Marshall, P., and Maynard, J. (2010) Adapting to Change: Minimising Uncertainty about the Effects of Rapidly-Changing Environmental Conditions on the Queensland Coral Reef Fin Fish Fishery. Report. Fishing and Fisheries Research Centre, James Cook University, Townsville, Qld, Australia.

Ceccarelli, D., Choat, J.H., Ayling, A., Richards, Z.T., Van Herwerden, L., Ewel, G.D., Hobbs, J-P., and Cuff, B. (2008) Coringa-Herald National Nature Reserve Marine Survey 2007. Report. Department of the Environment, Water, Heritage and the Arts, Canberra, ACT, Australia.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Schaffelke, Britta, Heimann, Kirsten, Marshall, Paul A, and Ayling, A.M. (2004) Blooms of Chrysocystis fragilis on the Great Barrier Reef. Coral Reefs, 23 (4). p. 514.

Williamson, D.H., Russ, G.R., and Ayling, A.M. (2004) No-take marine reserves increase abundance and biomass of reef fish on inshore fringing reefs of the Great Barrier Reef. Environmental Conservation, 31 (2). pp. 149-159.