Publications by: Jon Brodie

Also publishes as (Jon E. Brodie, J.E. Brodie, J. Brodie)

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Number of items: 119.

Waterhouse, Jane, Brodie, Jon, Lewis, Stephen, and Audas, Donna-Marie (2016) Land-sea connectivity, ecohydrology and holistic management of the Great Barrier Reef and its catchments: time for a change. Ecohydrology and Hydrobiology, 16 (1). pp. 45-57.

Gladish, Daniel W., Kuhnert, Petra M., Pagendam, Daniel E., Wikle, Christopher K., Bartley, Rebecca, Searle, Ross D., Ellis, Robin J., Dougall, Cameron, Turner, Ryan D.R., Lewis, Stephen E., Bainbridge, Zoe T., and Brodie, Jon E. (2016) Spatio-temporal assimilation of modelled catchment loads with monitoring data in the Great Barrier Reef. Annals of Applied Statistics, 10 (3). pp. 1590-1618.

Chaiechi, Taha, Stoeckl, Natalie, Jarvis, Diane, Lewis, Stephen, and Brodie, Jon (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. Australian Journal of Agricultural and Resource Economics, 60 (3). pp. 386-405.

Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. pp. 1-14.

O'Brien, Dominique, Lewis, Stephen, Davis, Aaron, Gallen, Christie, Smith, Rachael, Turner, Ryan, Warne, Michael, Turner, Scott, Caswell, Stewart, Mueller, Jochen F., and Brodie, Jon (2016) Spatial and temporal variability in pesticide exposure downstream of a heavily irrigated cropping area: application of different monitoring techniques. Journal of Agricultural and Food Chemistry, 64 (20). pp. 3975-3989.

Brodie, Jon E., Lewis, Stephen E., Collier, Catherine J., Wooldridge, Scott, Bainbridge, Zoe, Waterhouse, Jane, Rasheed, Michael, Honchin, Carol, Holmes, Glen, and Fabricius, Katharina (2016) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: a preliminary methodology and analysis. Ocean & Coastal Management. pp. 1-12. (In Press)

Bainbridge, Zoe, Lewis, Stephen, Smithers, Scott, Wilkinson, Scott, Douglas, Grant, Hillier, Stephen, and Brodie, Jon (2016) Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils Sediments, 16 (2). pp. 687-706.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Davis, Aaron M., Pearson, Richard G., Brodie, Jon E., and Butler, Barry (2016) Review and conceptual models of agricultural impacts and water quality in waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research, 68 (1). pp. 1-19.

Dale, Allan P., Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management, 183 (Part 3). pp. 712-721.

Álvarez-Romero, Jorge G., Pressey, Robert L., Ban, Natalie C., and Brodie, Jon (2015) Advancing land-sea conservation planning: integrating modelling of catchments, land-use change, and river plumes to prioritise catchment management and protection. PLoS ONE, 10 (12). pp. 1-26.

Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.

Wooldridge, Scott A., Brodie, Jon E., Kroon, Frederieke J., and Turner, Ryan D.R. (2015) Ecologically based targets for bioavailable (reactive) nitrogen discharge from the drainage basins of the Wet Tropics region, Great Barrier Reef. Marine Pollution Bulletin, 97 (1-2). pp. 262-272.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas, Brodie, Jon, Waterhouse, Jane, and Martin, Katherine (2015) Improvements to water quality monitoring through the inclusion of ocean colour products correlated with in-situ water quality gradients for the Great Barrier Reef. In: Posters from the International Ocean Colour Science meeting. From: IOCS 2015: Second International Ocean Colour Science Meeting, 15-18 June 2015, San Fransisco, CA, USA.

Weeks, Scarla J., Magno-Canto, Marites M., Jaine, Fabrice R.A., Brodie, Jon, and Richardson, Anthony J. (2015) Unique sequence of events triggers manta ray feeding frenzy in the Southern Great Barrier Reef, Australia. Remote Sensing, 7 (3). pp. 3138-3152.

Wenger, Amelia S., Fabricius, Katharina E., Jones, Geoffrey P., and Brodie, Jon E. (2015) Effects of sedimentation, eutrophication and chemical pollution on coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 145-153.

Brodie, Jon, Lewis, Stephen, Davis, Aaron, Bainbridge, Zoe, O'Brien, Dominique, Waterhouse, Jane, Devlin, Michelle, and Thomas, Colette R. (2015) Management of agriculture to preserve environmental values of the Great Barrier Reef, Australia. In: Chicharo, Luís, Müller, Felix, and Fohrer, Nicola, (eds.) Ecosystems Services and River Basin Ecohydrology. Springer, Dordrecht, Netherlands, pp. 275-292.

Hughes, Terry P., Day, John, and Brodie, Jon (2015) Securing the future of the Great Barrier Reef. Nature Climate Change, 5. pp. 508-511.

Álvarez-Romero, Jorge G., Wilkinson, Scott N., Pressey, Robert L., Ban, Natalie C., Kool, Johnathan, and Brodie, Jon (2014) Modeling catchment nutrients and sediment loads to inform regional management of water quality in coastal-marine ecosystems: a comparison of two approaches. Journal of Environmental Management, 146. pp. 164-178.

Stoeckl, Natalie, Farr, Marina, Jarvis, Diane, Larson, Silva, Esparon, Michelle, Sakata, Hana, Chaiechi, Taha, Liu, Hongbo, Brodie, Jon, Lewis, Stephen, Mustika, Putu, Adams, Vanessa, Chacon, Adriana, Bos, Melissa, Pressey, Bob, Kubiszewski, Ida, and Costanza, Bob (2014) The Great Barrier Reef World Heritage Area: its 'value' to residents and tourists, and the effect of world prices on it. Final report to the National Environmental Research Program. Report. Reef and Rainforest Research Centre, James Cook University, Cairns, QLD, Australia.

Bainbridge, Zöe T., Lewis, Stephen E., Smithers, Scott G., Kuhnert, Petra M., Henderson, Brent L., and Brodie, Jon E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia. Water Resources Research, 50 (11). pp. 9067-9087.

Davis, A.M., Lewis, S.E., Brodie, J.E., and Benson, Ash (2014) The potential benefits of herbicide regulation: a cautionary note for the Great Barrier Reef catchment area. Science of the Total Environment, 490. pp. 81-92.

Fabricius, K.E, Logan, M., Weeks, S., and Brodie, J. (2014) The effects of river run-off on water clarity across the central Great Barrier Reef. Marine Pollution Bulletin, 84 (1-2). pp. 191-200.

Waterhouse, Jane, Brodie, Jon, Petus, Caroline, and Wolanski, Eric (2014) Hazard assessment for water quality threats to Torres Strait marine waters and ecosystems. In: Abstracts from the Society for Conservation Biology Oceania Conference, p. 102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.

Brodie, Jon, Waterhouse, Jane, and Maynard, Jeffrey (2014) Prioritising catchment agricultural management practice change through marine risk assessment in the Great Barrier Reef. In: Abstracts from the Society for Conservation Biology Oceania Conference, pp. 101-102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.

Brodie, Jon (2014) Dredging the Great Barrier Reef: use and misuse of science. Estuarine, Coastal and Shelf Science , 142. pp. 1-3.

O'Brien, Dominique, Davis, Aaron, Nash, Michael, Di Bella, Lawrence, and Brodie, Jon (2014) Herbert water quality monitoring project: 2011–2013 results. In: Proceedings of the Australian Society of Sugar Cane Technologists (36), pp. 205-219. From: ASSCT 2014: 36th Annual Conference of the Australian Society of Sugar Cane Technologists, 28 April - 1 May 2014, Broadbeach, QLD, Australia.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, D. Mark (2014) Relating sediment impacts on coral reefs to watershed sources, processes and management: a review. Science of the Total Environment, 468-469. pp. 1138-1153.

Oliver, Danielle P., Anderson, Jenny S., Davis, Aaron, Lewis, Stephen, Brodie, Jon, and Kookana, Rai (2014) Banded applications are highly effective in minimising herbicide migration from furrow-irrigated sugar cane. Science of the Total Environment, 466-467. pp. 841-848.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, Mark D. (2014) From coral to cows: using ecosystem processes to inform catchment management of the Great Barrier Reef. In: Proceedings of the 7th Australian Stream Management Conference, pp. 9-16. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.

Davis, Aaron M., Lewis, Stephen E., O'Brien, Dominique S., Bainbridge, Zoë T., Bentley, Christie, Mueller, Jochen F., and Brodie, Jon E. (2014) Water resource development and high value coastal wetlands on the lower Burdekin floodplain, Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 223-246.

Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R., and Brodie, J.E. (2013) Environmental impacts of irrigated sugarcane production: Herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment, 180. pp. 123-135.

King, Juliette, Alexander, Frances, and Brodie, Jon (2013) Regulation of pesticides in Australia: the Great Barrier Reef as a case study for evaluating effectiveness. Agriculture, Ecosystems and Environment, 180. pp. 54-67.

Butler, James R.A., Wong, Grace Y., Metcalfe, Daniel J., Honzák, Miroslav, Pert, Petina L., Rao, Nalini, van Grieken, Martijn E., Lawson, Tina, Bruce, Caroline, Kroon, Frederieke J., and Brodie, Jon E. (2013) An analysis of trade-offs between multiple ecosystem services and stakeholders linked to land use and water quality management in the Great Barrier Reef, Australia. Agriculture, Ecosystems and Environment, 180. pp. 176-191.

Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. pp. 1-22.

Grech, A., Bos, M., Brodie, J., Coles, R., Dale, A., Gilbert, R., Hamann, M., Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M., and Smith, A. (2013) Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef. Marine Pollution Bulletin, 75 (1). pp. 8-20.

Alvarez-Romero, Jorge G., Devlin, Michelle, da Silva, Eduardo Teixeira, Petus, Caroline, Ban, Natalie C., Pressey, Robert L., Kool, Johnathan, Roberts, Jason J., Cerdeira-Estrada, Sergio, Wenger, Amelia S., and Brodie, Jon (2013) A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques. Journal of Environmental Management, 119. pp. 194-207.

Lewis, Stephen E., Bainbridge, Zöe T., Kuhnert, Petra M., Sherman, Bradford S., Henderson, Brent, Dougall, Cameron, Cooper, Michelle, and Brodie, Jon E. (2013) Calculating sediment trapping efficiencies for reservoirs in tropical settings: a case study from the Burdekin Falls Dam, NE Australia. Water Resources Research, 49 (2). pp. 1017-1029.

Tsatsaros, Julie, Brodie, Jon E., Bohnet, Iris C., and Valentine, Peter (2013) Water quality degradation of coastal waterways in the Wet Tropics, Australia. Water, Air and Soil Pollution, 224. pp. 1-22.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Augé, Amélie A., Maughan, Mirjam, Pressey, Robert L., Brodie, Jon, Dale, Allan, and Yorkston, Hugh (2013) Spatially explicit scenarios for conservation planning in the Great Barrier Reef coastal zone, Australia. In: Proceedings of the CoastGIS Conference 2013: monitoring and adapting to change on the coast, pp. 179-182. From: CoastGIS 2013: 11th International Symposium for GIS and Computer Cartography for Coastal Zone Management, 18-21 June 2013, Victoria, BC, Canada.

O'Brien, Dominique, Davis, Aaron, Nash, Michael, Di Bella, Lawrence, Turner, Ryan, Reghenzani, John, and Brodie, Jon (2013) Water quality within the Herbert River Catchment associated with specific land use. In: Proceedings of the 35th Conference of the Australian Society of Sugar Cane Technologists, pp. 1-14. From: 35th Conference of the Australian Society of Sugar Cane Technologists, 16-18 April 2013, Townsville, QLD, Australia.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Yorkston, Hugh, and Potts, Ruth (2013) A method for risk analysis across governance systems: a Great Barrier Reef case study. Environmental Research Letters, 8 (1). pp. 1-16.

Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.

Davis, Aaron M., Lewis, Stephen E., Bainbridge, Zoë T., Glendenning, Lionel, Turner, Ryan D.R., and Brodie, Jon E. (2012) Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 182-193.

Bainbridge, Zoe T., Wolanski, Eric, Alvarez Romero, Jorge, Lewis, Stephen E., and Brodie, Jon E. (2012) Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 236-248.

Schroeder, Thomas, Devlin, Michelle J., Brando, Vittorio E., Dekker, Arnold G., Brodie, Jon E., Clementson, Lesley A., and McKinna, Lachlan (2012) Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations. Marine Pollution Bulletin, 65 (4-9). pp. 210-223.

Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., and Brodie, J. (2012) Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 224-235.

Shaw, C.M., Brodie, J., and Mueller, J.F. (2012) Phytotoxicity induced in isolated zooxanthellae by herbicides extracted from Great Barrier Reef flood waters. Marine Pollution Bulletin, 65 (4-9). pp. 355-362.

Waterhouse, J., Brodie, J., Lewis, S., and Mitchell, A. (2012) Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65 (4-9). pp. 394-406.

Kuhnert, Petra M., Henderson, Brent L., Lewis, Stephen E., Bainbridge, Zoe T., Wilkinson, Scott N., and Brodie, Jon E. (2012) Quantifying total suspended sediment export from the Burdekin River catchment using the loads regression estimator tool. Water Resources Research, 48 (4). pp. 1-18.

Webster, A.J., Bartley, R., Armour, J.D., Brodie, J.E., and Thorburn, P.J. (2012) Reducing dissolved inorganic nitrogen in surface runoff water from sugarcane production systems. Marine Pollution Bulletin, 65 (4-9). pp. 128-135.

Kroon, Frederieke J., Kuhnert, Petra M., Henderson, Brent L., Wilkinson, Scott N., Kinsey-Henderson, Anne, Abbot, Brett, Brodie, Jon E., and Turner, Ryan D.R. (2012) River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9). pp. 167-181.

Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E.C., Lewis, S.E., Devlin, M.J., Bohnet, I.C., Bainbridge, Z.T., Waterhouse, J., and Davis, A.M. (2012) Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses. Marine Pollution Bulletin, 65 (4-9). pp. 81-100.

Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.

Brodie, Jon, Wolanski, Eric, Lewis, Stephen, and Bainbridge, Zoe (2012) An assessment of residence times of land-sourced contaminants in the Great Barrier Reef lagoon and the implications for management and reef recovery. Marine Pollution Bulletin, 65 (4-9). pp. 267-279.

Brodie, Jon, and Waterhouse, Jane (2012) A critical review of environmental management of the 'not so Great' Barrier Reef. Estuarine, Coastal and Shelf Science , 104-105. pp. 1-22.

Kennedy, Karen, Devlin, Michelle, Bentley, Christie, Lee-Chue, Kristie, Paxman, Chris, Carter, Steve, Lewis, Stephen, Brodie, Jon, Guy, Ellia, Vardy, Suzanne, Martin, Katherine C., Jones, Alison, Packett, Robert, and Mueller, Jochen F. (2012) The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64 (7). pp. 1495-1507.

Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation, pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.

Brodie, J.E., Devlin, M., Haynes, D., and Waterhouse, J. (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302.

Waterhouse, Jane, Brodie, Jon, UNSPECIFIED, and UNSPECIFIED (2011) Identification of Priority Pollutants and Priority Areas in the Great Barrier Reef catchments. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Wilkinson, Clive, and Brodie, Jon (2011) Catchment Management and Coral Reef Conservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia.

Bainbridge, Zoe, Dight, Ian, Yorkston, Hugh, Lewis, Stephen, and Brodie, Jon (2011) Catchment management in a dry tropical river near the Great Barrier Reef. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 96-97.

Bohnet, Iris C., Roebeling, Peter C., Williams, Kristen J., Holzworth, Dean, van Grieken, Martijn E., Pert, Petina L., Kroon, Frederieke J., Westcott, David A., and Brodie, Jon (2011) Landscapes Toolkit: an integrated modelling framework to assist stakeholders in exploring options for sustainable landscape development. Landscape Ecology, 26 (8). pp. 1179-1198.

Fabricius, Katharina, Brodie, Jon, Waterhouse, Jane, and Yorkston, Hugh (2011) Science-based catchment management is evolving along the Great Barrier Reef of Australia. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 102-105.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Scott, Colin, Lewis, Steve E., Milla, Rob, Taylor, Matthew C., Rodgers, Andrew J.W., Dumsday, Geoff, Brodie, Jon E., Oakeshott, John G., and Russell, Robyn J. (2010) A free-enzyme catalyst for the bioremediation of environmental atrazine contamination. Journal of Environmental Management, 91 (10). pp. 2075-2078.

Pert, P.L., Butler, J.R.A., Brodie, J.E., Bruce, C., Honzák, M., Kroon, F.J., Metcalfe, D., Mitchell, D., and Wong, G. (2010) A catchment-based approach to mapping hydrological ecosystem services using riparian habitat: a case study from the Wet Tropics, Australia. Ecological Complexity, 7 (3). pp. 378-388.

Shenton, Will, Hart, Barry T., and Brodie, Jon (2010) A Bayesian network model linking nutrient management actions in the Tully catchment (northern Queensland) with Great Barrier Reef condition. Marine and Freshwater Research, 61 (5). pp. 587-595.

Brodie, Jon, Schroeder, Thomas, Rohde, Ken, Faithful, John, Masters, Bronwyn, Dekker, Arnold, Brando, Vittorio, and Maughan, Mirjam (2010) Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river-discharge events: conclusions from satellite remote sensing and concurrent flood-plume sampling. Marine and Freshwater Research, 61 (6). pp. 651-664.

Waterhouse, Jane, Grundy, Mike, Gordon, Iain, Brodie, Jon, Eberhard, Rachel, and Yorkston, Hugh (2010) Managing the catchments of the Great Barrier Reef. In: Ferrier, Robert C., and Jenkins, Alan, (eds.) Handbook of Catchment Management. Wiley-Blackwell, Oxford, UK, pp. 350-375.

Mitchell, Alan, Brodie, Jon, and Furnas, Miles (2010) Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987-2000. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

Lewis, Stephen, Milla, Rob, Brodie, Jon, Bainbridge, Zoë, and Davis, Aaron (2009) Pesticide residues in the Great Barrier Reef. Pesticides News, 86. pp. 8-11.

Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Lewis, S.E., Sherman, B.S., Bainbridge, Z.T., Brodie, J.E., and Cooper, M. (2009) Modelling and monitoring the sediment trapping efficiency and sediment dynamics of the Burdekin Falls Dam, Queensland, Australia. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, pp. 4022-4028. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Brodie, Jon, Pearson, Richard, Lewis, Stephen, Bainbridge, Zoe, Waterhouse, Jane, and Prange, Joelle (2009) Water quality research: baseline synthesis and year 1 summary. Report. Reef and Rainforest Research Centre on behalf of the Australian Government's Marine and Tropical Sciences Research Facility, Cairns, Australia.

Kroon, F.J., and Brodie, J. (2009) Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60 (11). pp. 1196-1200.

Maughan, M., and Brodie, J. (2009) Reef exposure to river-borne contaminants: a spatial model. Marine and Freshwater Research, 60 (11). pp. 1132-1140.

Mitchell, A., Reghenzani, J., Faithful, J., Furnas, M., and Brodie, J. (2009) Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern Australia. Marine and Freshwater Research, 60 (11). pp. 1097-1108.

Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

O'Reagain, Peter, Bainbridge, Zoe, and Brodie, Jon (2008) Wambiana Grazing Trial: water quality update to Burdekin Dry Tropics NRM. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Davis, Aaron, Lewis, Stephen, Bainbridge, Zoe, Brodie, Jon, and Shannon , Evan (2008) Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14. pp. 89-108.

Bohnet, Iris, Brodie, Jon, and Bartley, Rebecca (2008) Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, Far North Queensland. In: Pettit, Christopher, Cartwright, William, Bishop, Ian, Lowell, Kim, Pullar, David, and Duncan, David, (eds.) Landscape Analysis and Visualisation: spatial models for natural resource management and planning. Springer, Berlin, Heidleberg, pp. 383-406.

Webster, Tony, and Brodie, Jon (2008) Douglas Shire Fertiliser Trial and a Review of Nitrogen Fertiliser Research in Sugarcane Cultivation. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Bainbridge, Zoe, Brodie, Jon, Manning, Chris, Waterhouse, Jane, Lewis, Stephen, Gooch, Margaret, and Broderick, Kathleen (2008) Integrated Monitoring and Modelling Strategy for the Black Ross Water Quality Improvement Plan. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, J., and Fabricius, K. (2008) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 108-113.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.

Maughan, M, Brodie, J, and Waterhouse, J (2008) What river impacts this reef? A simple reef exposure model. In: Proceedings of Water Down Under 2008: incorporating 31st Hydrology and Water Resources Symposium and 4th International Conference on Water Resources and Environment Research, pp. 1912-1923. From: Water Down Under 2008, 15-17 Apr 2008, Adelaide, SA, Australia.

Haynes, David, Brodie, Jon, Waterhouse, Jane, Bainbridge, Zoe, Bass, Deb, and Hart, Barry (2007) Assessment of the water quality and ecosystem health of the Great Barrier Reef (Australia): conceptual models. Environmental Management, 40 (6). pp. 993-1003.

Turak, Emre, Brodie, Jon, and DeVantier, Lyndon (2007) Reef-building corals and coral communities of the Yemen Red Sea. Fauna of Arabia, 23. pp. 1-40.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Hateley, L.R., Armour, J.D., Brodie, J., Faithful, J., Pitt, G.L., and Nelson, P.N. (2007) Modelling, monitoring and sediment tracing in the Tully river catchment, North Queensland: a comparison of techniques. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 867-873. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Bainbridge, Z.T., Lewis, S.E., and Brodie, J.E. (2007) Sediment and nutrient exports for the Burdekin River catchment, north Queensland: a comparison of monitoring and modelling data. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 874-880. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Lewis, S.E., Bainbridge, Z.T., and Brodie, J.E. (2007) A review of load tools available for calculating pollutant exports to the Great Barrier Reef lagoon: a case study of varying catchment areas. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 2396-2402. From: MODSIM07 International Congress on Modelling and Simulation: Land, Water & Environmental Management: Integrated Systems for Sustainability, 10-13 December 2007, Christchurch, New Zealand.

Wooldridge, Scott, Brodie, Jon, and Furnas, Miles (2006) Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post-European changes and the design of water quality targets. Marine Pollution Bulletin, 52 (11). pp. 1467-1479.

Thomas, C., Hart, B., Nicholson, A., Grace, M., Brodie, J., and Pollino, C. (2005) Development of criteria for simplifying ecological risk models. In: MODSIM05 International Conference on Modelling and Simulation, pp. 772-778. From: MODSIM05 International Conference on Modelling and Simulation, 12-15 December 2005, Melbourne, Australia.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

O'Reagain, P.J., Brodie, J., Fraser, G., Bushell, J.J., Holloway, C.H., Faithful, J.W., and Haynes, D. (2005) Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, North Queensland. Marine Pollution Bulletin, 51 (1). pp. 37-50.

Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 186-199.

Mitchell, C., Brodie, J., and White, I. (2005) Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51 (1). pp. 23-36.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 200-211.

Devlin, M.J., and Brodie, J. (2005) Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51 (1). pp. 9-22.

Moss, Andrew, Brodie, Jon, and Furnas, Miles (2005) Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51 (1). pp. 76-88.

Greiner, R., Herr, A., Brodie, J., and Haynes, D. (2005) A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51 (1). pp. 128-137.

Brodie, Jon E., and Devlin, Michelle (2004) Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the 10th International Coral Reef Symposium, p. 79. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.

Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.

Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.

Devlin, Michelle, Brodie, Jon, Waterhouse, Jane, Mitchell, Alan , Audas, Donna, and Haynes, David (2003) Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon (2003) The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Hempel, Gotthilf, and Sherman, Kenneth, (eds.) Large Marine Ecosystems of the World: trends in exploitation, protection, and research. Elsevier, The Netherlands, pp. 313-336.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Koop, K., Booth, D., Broadbent, A., Brodie, J., Bucher, D., Capone, D., Coll, J., Dennison, W., Erdmann, M., Harrison, P., Hoegh-Guldberg, O., Hutchings, P., Jones, Graham, Larkum, A.W.D., O'Neil, J., Steven, A., Tentori, E., Ward, S., Williamson, J., and Yellowlees, D. (2001) ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions. Marine Pollution Bulletin, 42 (2). pp. 91-120.

This list was generated on Mon Mar 27 22:32:51 2017 AEST.