Spectral distortion measures for biological sequence comparisons and database searching

Pham, Tuan D. (2007) Spectral distortion measures for biological sequence comparisons and database searching. Pattern Recognition, 40 (2). pp. 516-529.

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Abstract

In bioinformatics and computational biology, methods for biological sequence comparison play the most important role for the interpretation of complex nucleotide and protein data such as the inference of relationships between genes, proteins and species; and the discovery of novel protein structures and functions. This type of inference is derived by sequence similarity matching on the databases of biological sequences. As many entire genomes have being determined at a rapid rate, computational methods for comparing genomic and protein sequences will be more essential for probing the complexity of genes, genomes, and molecular machines. In this paper we introduce a pattern-comparison algorithm, which is based on the mathematical concepts of linear predictive coding and its cepstral-distortion measures for the analyses of both DNA and protein sequences. The results obtained from several experiments on real datasets have shown the effectiveness of the proposed approach.

Item ID: 2745
Item Type: Article (Refereed Research - C1)
Keywords: distortion measures; DNA sequences
ISSN: 1873-5142
Date Deposited: 31 Aug 2009 07:03
FoR Codes: 08 INFORMATION AND COMPUTING SCIENCES > 0801 Artificial Intelligence and Image Processing > 080106 Image Processing @ 34%
08 INFORMATION AND COMPUTING SCIENCES > 0801 Artificial Intelligence and Image Processing > 080108 Neural, Evolutionary and Fuzzy Computation @ 33%
10 TECHNOLOGY > 1099 Other Technology > 109999 Technology not elsewhere classified @ 33%
SEO Codes: 92 HEALTH > 9202 Health and Support Services > 920203 Diagnostic Methods @ 100%
Citation Count from Web of Science Web of Science 17
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